RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 C17orf62Q9BQA9 187 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 TMEM138Q9NPI0 162 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 UROSP10746 265 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 RBMS1P29558 406 aaKnown RBP20.23■□□□□ 0.83
UPF1-207ENST00000599848 MPIP34949 423 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 CDK9P50750 372 aaKnown RBP20.23■□□□□ 0.83
UPF1-207ENST00000599848 ARHGAP36Q6ZRI8 547 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 CUZD1Q86UP6 607 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 OR7D4Q8NG98 312 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 LRMDAQ9H2I8 198 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 FAM237AA0A1B0GTK4 181 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 TEX46H3BTG2 121 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 PROCP04070 461 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 SFRP1Q8N474 314 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 DGAT2Q96PD7 388 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 COMMD4Q9H0A8 199 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 MKKSQ9NPJ1 570 aaPredicted RBP20.23■□□□□ 0.83
UPF1-207ENST00000599848 A0A0U1RQF3 1178 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 UBOX5O94941 541 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 SYN1P17600 705 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 ANKFN1Q8N957 763 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 FAM46DQ8NEK8 389 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 BHLHE22Q8NFJ8 381 aaPredicted RBP20.23■□□□□ 0.83
UPF1-207ENST00000599848 OR4K17Q8NGC6 315 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 TSEN15Q8WW01 171 aaKnown RBP20.23■□□□□ 0.83
UPF1-207ENST00000599848 LDAHQ9H6V9 325 aa20.23■□□□□ 0.83
UPF1-207ENST00000599848 FCF1Q9Y324 198 aaKnown RBP20.23■□□□□ 0.83
UPF1-207ENST00000599848 GABRDO14764 452 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 ALOX15BO15296 676 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 UGT2B11O75310 529 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 LYPLA1O75608 230 aaPredicted RBP20.22■□□□□ 0.83
UPF1-207ENST00000599848 TNFRSF8P28908 595 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 CRADDP78560 199 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 RAPSNQ13702 412 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 CBFBQ13951 182 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 PDK4Q16654 411 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 PTPN20Q4JDL3 420 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 BICRALQ6AI39 1079 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 NUDT13Q86X67 352 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 C1orf127Q8N9H9 656 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 DNAJB14Q8TBM8 379 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 CCDC28BQ9BUN5 200 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 C1orf50Q9BV19 199 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 ADAM7Q9H2U9 754 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 ASNA1O43681 348 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 PER3P56645 1201 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 CHIT1Q13231 466 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 NAIF1Q69YI7 327 aaPredicted RBP20.22■□□□□ 0.83
UPF1-207ENST00000599848 FBXO46Q6PJ61 603 aaPredicted RBP20.22■□□□□ 0.83
UPF1-207ENST00000599848 ABRAXAS1Q6UWZ7 409 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 ATP6V1C2Q8NEY4 427 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 PLEKHG4BQ96PX9 1271 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 SPATA6Q9NWH7 488 aaPredicted RBP20.22■□□□□ 0.83
UPF1-207ENST00000599848 TOR4AQ9NXH8 423 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 L1RE1Q9UN81 338 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 LRATO95237 230 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 PIK3CBP42338 1070 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 RPL19P84098 196 aaKnown RBP20.22■□□□□ 0.83
UPF1-207ENST00000599848 NAA30Q147X3 362 aaPredicted RBP20.22■□□□□ 0.83
UPF1-207ENST00000599848 PIK3R6Q5UE93 754 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 TREML1Q86YW5 311 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 TBC1D21Q8IYX1 336 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 SLC47A1Q96FL8 570 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 SLC35G5Q96KT7 338 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 GPR21Q99679 349 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 FBRSQ9HAH7 460 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.22■□□□□ 0.83
UPF1-207ENST00000599848 OR5K4A6NMS3 321 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 PITPNM1O00562 1244 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 PDPK1O15530 556 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 LINC00032P0C843 101 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 ENDOUP21128 410 aaKnown RBP20.22■□□□□ 0.83
UPF1-207ENST00000599848 GNALP38405 381 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 GRIA3P42263 894 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 TESCQ96BS2 214 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 ARHGAP39Q9C0H5 1083 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 IPPKQ9H8X2 491 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 CHMP1AQ9HD42 196 aaPredicted RBP20.22■□□□□ 0.83
UPF1-207ENST00000599848 FBXL12Q9NXK8 326 aa20.22■□□□□ 0.83
UPF1-207ENST00000599848 C4BPAP04003 597 aaKnown RBP20.21■□□□□ 0.83
UPF1-207ENST00000599848 TRAP1Q12931 704 aaKnown RBP20.21■□□□□ 0.83
UPF1-207ENST00000599848 SF3B4Q15427 424 aaKnown RBP eCLIP20.21■□□□□ 0.835e-7■■■■□ 24.1
UPF1-207ENST00000599848 TSTD2Q5T7W7 516 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 POMZP3Q6PJE2 187 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 LINGO4Q6UY18 593 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 KCTD15Q96SI1 283 aaPredicted RBP20.21■□□□□ 0.83
UPF1-207ENST00000599848 CALCAP01258 141 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 VIPR1P32241 457 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 GLB1L3Q8NCI6 653 aaPredicted RBP20.21■□□□□ 0.83
UPF1-207ENST00000599848 RBPJLQ9UBG7 517 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 FBXW11Q9UKB1 542 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 NEURL4Q96JN8 1562 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 ALOX5P09917 674 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 ALOX12P18054 663 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 POU5F2Q8N7G0 328 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 LNX1Q8TBB1 728 aaPredicted RBP20.21■□□□□ 0.83
UPF1-207ENST00000599848 PIH1D2Q8WWB5 315 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 NTAN1Q96AB6 310 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 ELMO3Q96BJ8 720 aa20.21■□□□□ 0.83
UPF1-207ENST00000599848 ZSCAN5DPP0CG00 497 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms