RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 LRRC40Q9H9A6 602 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 FBXO8Q9NRD0 319 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 FAM8A1Q9UBU6 413 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 FEZ2Q9UHY8 353 aaPredicted RBP12.78□□□□□ -0.36
LIG1-212ENST00000596549 CRLS1Q9UJA2 301 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 PILRAQ9UKJ1 303 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 PCDHB11Q9Y5F2 797 aa12.78□□□□□ -0.36
LIG1-212ENST00000596549 DNMT3AQ9Y6K1 912 aaPredicted RBP12.78□□□□□ -0.36
LIG1-212ENST00000596549 IGLV3-16A0A075B6K0 115 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 TRBV5-4A0A0C4DH59 114 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 LIASO43766 372 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 AP2A1O95782 977 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 DLGAP3O95886 979 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 PTMAP06454 111 aaKnown RBP12.77□□□□□ -0.37
LIG1-212ENST00000596549 MTHFD1P11586 935 aaKnown RBP12.77□□□□□ -0.37
LIG1-212ENST00000596549 LIFP15018 202 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 AMD1P17707 334 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 ITGALP20701 1170 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 ATP1A2P50993 1020 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 SH3BP2P78314 561 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 POU6F1Q14863 301 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 SIX1Q15475 284 aaPredicted RBP12.77□□□□□ -0.37
LIG1-212ENST00000596549 P3H1Q32P28 736 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 ZNF658BQ4V348 819 aaPredicted RBP12.77□□□□□ -0.37
LIG1-212ENST00000596549 SEL1L2Q5TEA6 688 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 CEACAM20Q6UY09 585 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 FAM92BQ6ZTR7 304 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 TIPARPQ7Z3E1 657 aaKnown RBP12.77□□□□□ -0.37
LIG1-212ENST00000596549 PRSS42Q7Z5A4 293 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 SNX20Q7Z614 316 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 PRUNE1Q86TP1 453 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 RNF10Q8N5U6 811 aaKnown RBP12.77□□□□□ -0.37
LIG1-212ENST00000596549 OR2L2Q8NH16 312 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 ZNF514Q96K75 400 aaPredicted RBP12.77□□□□□ -0.37
LIG1-212ENST00000596549 TEFMQ96QE5 360 aaKnown RBP12.77□□□□□ -0.37
LIG1-212ENST00000596549 INSM2Q96T92 566 aaPredicted RBP12.77□□□□□ -0.37
LIG1-212ENST00000596549 ASPSCR1Q9BZE9 553 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 RAB33BQ9H082 229 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 WWP1Q9H0M0 922 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 IMP3Q9NV31 184 aaKnown RBP12.77□□□□□ -0.37
LIG1-212ENST00000596549 NLE1Q9NVX2 485 aaPredicted RBP12.77□□□□□ -0.37
LIG1-212ENST00000596549 GUCA1BQ9UMX6 200 aa12.77□□□□□ -0.37
LIG1-212ENST00000596549 TMEM184BQ9Y519 407 aaPredicted RBP12.77□□□□□ -0.37
LIG1-212ENST00000596549 CCDC78A2IDD5 438 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 MGAT4DA6NG13 374 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 STK17BO94768 372 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 ZNF28P17035 718 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 TPH1P17752 444 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 ACRV1P26436 265 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 HADHAP40939 763 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 SEPHS1P49903 392 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 GSDMDP57764 484 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 PDE1BQ01064 536 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 C19orf57Q0VDD7 668 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 SEPT6Q14141 434 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 IRGCQ6NXR0 463 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 SLC13A5Q86YT5 568 aaPredicted RBP12.76□□□□□ -0.37
LIG1-212ENST00000596549 CACNA2D3Q8IZS8 1091 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 EXD3Q8N9H8 876 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 GLIS1Q8NBF1 620 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 HM13Q8TCT9 377 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 EXTL1Q92935 676 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 ULK4Q96C45 1275 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 C12orf66Q96MD2 445 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 SLC12A9Q9BXP2 914 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 TSGA10Q9BZW7 698 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 EPHA6Q9UF33 1036 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 CFAP46Q8IYW2 2715 aa12.76□□□□□ -0.37
LIG1-212ENST00000596549 IGHV5-51A0A0C4DH38 117 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 LOC101059948A0A1B0GTJ6 334 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 POLR1CO15160 346 aaPredicted RBP12.75□□□□□ -0.37
LIG1-212ENST00000596549 TOX3O15405 576 aaPredicted RBP12.75□□□□□ -0.37
LIG1-212ENST00000596549 ARHGAP6O43182 974 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 KRT86O43790 486 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 SNRNP200O75643 2136 aaKnown RBP12.75□□□□□ -0.37
LIG1-212ENST00000596549 RASSF9O75901 435 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 ETS1P14921 441 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 PSMA3P25788 255 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 CCZ1BP86790 482 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 CCZ1P86791 482 aaPredicted RBP12.75□□□□□ -0.37
LIG1-212ENST00000596549 MEI1Q5TIA1 1274 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 SERPINA9Q86WD7 417 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 PIANPQ8IYJ0 282 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 NLGN4XQ8N0W4 816 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 IL22RA1Q8N6P7 574 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 NLGN4YQ8NFZ3 816 aaPredicted RBP12.75□□□□□ -0.37
LIG1-212ENST00000596549 OR52K1Q8NGK4 314 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 STYXQ8WUJ0 223 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 C1orf54Q8WWF1 131 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 KLHL6Q8WZ60 621 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 OR6C1Q96RD1 312 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 COPS8Q99627 209 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 COG4Q9H9E3 785 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 ZDHHC3Q9NYG2 299 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 SEMA5BQ9P283 1151 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 BSNQ9UPA5 3926 aa12.75□□□□□ -0.37
LIG1-212ENST00000596549 GCN1Q92616 2671 aaKnown RBP12.74□□□□□ -0.37
LIG1-212ENST00000596549 KLHL33A6NCF5 533 aa12.74□□□□□ -0.37
LIG1-212ENST00000596549 OR5K3A6NET4 321 aa12.74□□□□□ -0.37
LIG1-212ENST00000596549 MROH6A6NGR9 719 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms