RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 CFAP47Q6ZTR5 3102 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 DSPP15924 2871 aaKnown RBP11.66□□□□□ -0.54
LIG3-213ENST00000590630 IGHV1OR21-1A0A087WYE8 117 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 TRABD2BA6NFA1 517 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 LILRA5A6NI73 299 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 OR52A4PA6NMU1 304 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 C1QTNF9BB2RNN3 333 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 KIF2AO00139 706 aaPredicted RBP11.66□□□□□ -0.54
LIG3-213ENST00000590630 NDC80O14777 642 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 CASC3O15234 703 aaKnown RBP11.66□□□□□ -0.54
LIG3-213ENST00000590630 DUX1O43812 170 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 VAPBO95292 243 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 FTH1P02794 183 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 SLC35G4P0C7Q5 338 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 C1QTNF9P0C862 333 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 ARNTP27540 789 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 CD1CP29017 333 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 CCKBRP32239 447 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 SLC19A1P41440 591 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 RPA4Q13156 261 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 CLCA4Q14CN2 919 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 RTP5Q14D33 572 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 AMZ1Q400G9 498 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 ANKRD20A4Q4UJ75 823 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 ZNF658BQ4V348 819 aaPredicted RBP11.66□□□□□ -0.54
LIG3-213ENST00000590630 DNAJC21Q5F1R6 531 aaKnown RBP11.66□□□□□ -0.54
LIG3-213ENST00000590630 MRNIPQ6NTE8 343 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 ZNF449Q6P9G9 518 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 ZNF572Q7Z3I7 529 aaPredicted RBP11.66□□□□□ -0.54
LIG3-213ENST00000590630 MAATS1Q7Z4T9 603 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 TMEM135Q86UB9 458 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 CFAP206Q8IYR0 622 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 CXorf40BQ96DE9 158 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 SNF8Q96H20 258 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 TRIM51Q9BSJ1 452 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 STRADBQ9C0K7 418 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 SLC40A1Q9NP59 571 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.66□□□□□ -0.54
LIG3-213ENST00000590630 DKK4Q9UBT3 224 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 PCDHB1Q9Y5F3 818 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 ENTPD2Q9Y5L3 495 aa11.66□□□□□ -0.54
LIG3-213ENST00000590630 FAM187AA6NFU0 413 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 LIN7AO14910 233 aaPredicted RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 PFDN6O15212 129 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 OR1I1O60431 355 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 USP1O94782 785 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 SEC31AO94979 1220 aaKnown RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 POLBP06746 335 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 PROS1P07225 676 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 OR56A5P0C7T3 313 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 MTHFD1P11586 935 aaKnown RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 ARCN1P48444 511 aaKnown RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 INHBCP55103 352 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 CKAP4Q07065 602 aaKnown RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 ZFP36L1Q07352 338 aaKnown RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 EIF3IQ13347 325 aaKnown RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 SEMA3AQ14563 771 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 RPE65Q16518 533 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 RNF187Q5TA31 235 aaPredicted RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 WDR74Q6RFH5 385 aaPredicted RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 CES3Q6UWW8 571 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 XKR5Q6UX68 686 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 TMEM26Q6ZUK4 368 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 B3GNT8Q7Z7M8 397 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 SDCCAG8Q86SQ7 713 aaPredicted RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 LRRC6Q86X45 466 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 ZNF761Q86XN6 746 aaPredicted RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 PDIK1LQ8N165 341 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 AGGF1Q8N302 714 aaeCLIP11.65□□□□□ -0.54
LIG3-213ENST00000590630 OTUD6BQ8N6M0 293 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 OR4D9Q8NGE8 314 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 GPR150Q8NGU9 434 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 ZNF669Q96BR6 464 aaPredicted RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 STAMBPL1Q96FJ0 436 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 ATXN7L3BQ96GX2 97 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 LIN37Q96GY3 246 aaPredicted RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 AHCYL2Q96HN2 611 aaKnown RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 SIGLEC10Q96LC7 697 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 CNTNAP3BQ96NU0 1288 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 TCF12Q99081 682 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 NAT9Q9BTE0 207 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 TSSK1BQ9BXA7 367 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 CNTNAP3Q9BZ76 1288 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 FOXP3Q9BZS1 431 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 WWP1Q9H0M0 922 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 CCDC86Q9H6F5 360 aaKnown RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 COG4Q9H9E3 785 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 RDH14Q9HBH5 336 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 MARCH4Q9P2E8 410 aaPredicted RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 FAM8A1Q9UBU6 413 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 CDC23Q9UJX2 597 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 ATXN7L1Q9ULK2 861 aaPredicted RBP11.65□□□□□ -0.54
LIG3-213ENST00000590630 PSMD13Q9UNM6 376 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 MAD1L1Q9Y6D9 718 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 PRSS21Q9Y6M0 314 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 RPS6KL1Q9Y6S9 549 aa11.65□□□□□ -0.54
LIG3-213ENST00000590630 LAMA5O15230 3695 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 CCDC187A0A096LP49 1063 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 ZCWPW2A0A1B0GU75 182 aa11.64□□□□□ -0.55
LIG3-213ENST00000590630 EFCAB8A8MWE9 144 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms