RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 ISL2Q96A47 359 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 EME1Q96AY2 570 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 CCDC124Q96CT7 223 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 MRRFQ96E11 262 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 SUSD3Q96L08 255 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 APOLD1Q96LR9 279 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 ZNF597Q96LX8 424 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 CNBD2Q96M20 576 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 ZNF778Q96MU6 729 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 KLF6Q99612 283 aaPredicted RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 PRPF18Q99633 342 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 OLFM1Q99784 485 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 TMEM121Q9BTD3 319 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 ANKRD60Q9BZ19 345 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 BRD8Q9H0E9 1235 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 SDCBP2Q9H190 292 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 PCED1AQ9H1Q7 454 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 C12orf65Q9H3J6 166 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 PCIF1Q9H4Z3 704 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 SMYD3Q9H7B4 428 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 TMEM165Q9HC07 324 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 MRPL40Q9NQ50 206 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 C8orf4Q9NR00 106 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 DDX18Q9NVP1 670 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 KLHL11Q9NVR0 708 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 SMPD4Q9NXE4 827 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 GIN1Q9NXP7 522 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 LUZP4Q9P127 313 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 WRAP73Q9P2S5 460 aaPredicted RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 SUCOQ9UBS9 1254 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 MID2Q9UJV3 735 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 PTBP2Q9UKA9 531 aaKnown RBP4.13□□□□□ -1.75
LIG3-211ENST00000588713 APPL1Q9UKG1 709 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 MYRFQ9Y2G1 1151 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 DNAJC16Q9Y2G8 782 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 PCDHGA7Q9Y5G6 932 aa4.13□□□□□ -1.75
LIG3-211ENST00000588713 RP1L1Q8IWN7 2480 aaPredicted RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 A0A087WXM4 84 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 FAM170AA1A519 330 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 HTR3EA5X5Y0 456 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 TRIM64A6NGJ6 449 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 TRIM64BA6NI03 449 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 OR6C75A6NL08 312 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 ZNF487B1APH4 448 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 TISP43B9A030 160 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 H3BNH8 94 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 GOLGA8SH3BPF8 625 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 GOLGA8MH3BSY2 632 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 FBP2O00757 339 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 WNT9AO14904 365 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 NKX2-8O15522 239 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 DUX1O43812 170 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 NOL3O60936 208 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 SUPT3HO75486 399 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 BCAS2O75934 225 aaPredicted RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 STBD1O95210 358 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 H6PDO95479 791 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 IL2RAP01589 272 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 APOEP02649 317 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 GP1BAP07359 652 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 THBS1P07996 1170 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 NFICP08651 508 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 CSH1P0DML2 217 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 CSH2P0DML3 217 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 RBP3P10745 1247 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 FGF3P11487 239 aaPredicted RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 LIFP15018 202 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 ATP6V1B1P15313 513 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 HDCP19113 662 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 CD38P28907 300 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 HALP42357 657 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 PSMD8P48556 350 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 SLC1A6P48664 564 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 TUFMP49411 452 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 IDH3AP50213 366 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 BCAP31P51572 246 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 JAK3P52333 1124 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 PDX1P52945 283 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 PRKAA2P54646 552 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 GDF10P55107 478 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 EIF3EP60228 445 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 ESRRGP62508 458 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 BASP1P80723 227 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 MRPS22P82650 360 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 ZXDBP98169 803 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 GAD2Q05329 585 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 KLF10Q13118 480 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 PCLAFQ15004 111 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 EMC2Q15006 297 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 LLGL1Q15334 1064 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 CDKN3Q16667 212 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 HADHQ16836 314 aaKnown RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 LRRC36Q1X8D7 754 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 ZNF829Q3KNS6 432 aaPredicted RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 ZACNQ401N2 412 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 ZRANB3Q5FWF4 1079 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 PIGGQ5H8A4 983 aa4.12□□□□□ -1.75
LIG3-211ENST00000588713 TCHHL1Q5QJ38 904 aaPredicted RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 HP1BP3Q5SSJ5 553 aaPredicted RBP4.12□□□□□ -1.75
LIG3-211ENST00000588713 ZFYVE27Q5T4F4 411 aa4.12□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms