RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 TYRP1P17643 537 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 NMBRP28336 390 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 PPARGP37231 505 aaPredicted RBP19.1■□□□□ 0.65
SS18-209ENST00000578595 NSG1P42857 185 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 MAPK10P53779 464 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 EPHA4P54764 986 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 EIF3IQ13347 325 aaKnown RBP19.1■□□□□ 0.65
SS18-209ENST00000578595 KRT33BQ14525 404 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 ITIH4Q14624 930 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 LYPLAL1Q5VWZ2 237 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 PAPD7Q5XG87 772 aaKnown RBP19.1■□□□□ 0.65
SS18-209ENST00000578595 CES3Q6UWW8 571 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 WASH2PQ6VEQ5 465 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 TMEM26Q6ZUK4 368 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 ZNF534Q76KX8 674 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 CPT1BQ92523 772 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 CMKLR1Q99788 373 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 WASH6PQ9NQA3 447 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 THSD1Q9NS62 852 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 TMEM9Q9P0T7 183 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 DKK4Q9UBT3 224 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 ACSL5Q9ULC5 683 aa19.1■□□□□ 0.65
SS18-209ENST00000578595 IGLV3-16A0A075B6K0 115 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 PRAMEF33A0A0G2JMD5 474 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 IGHV5-10-1A0A0J9YXX1 117 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 KLHL33A6NCF5 533 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 PRR19A6NJB7 356 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 A8MU76 341 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 TAF4O00268 1085 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 QSOX1O00391 747 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 AVILO75366 819 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 HOXB3P14651 431 aaPredicted RBP19.09■□□□□ 0.65
SS18-209ENST00000578595 CASQ1P31415 396 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 GPR18Q14330 331 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 BRD3Q15059 726 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 CLPPQ16740 277 aaPredicted RBP19.09■□□□□ 0.65
SS18-209ENST00000578595 TBC1D25Q3MII6 688 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 SYTL3Q4VX76 610 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 AARS2Q5JTZ9 985 aaKnown RBP19.09■□□□□ 0.65
SS18-209ENST00000578595 DUS1LQ6P1R4 473 aaKnown RBP19.09■□□□□ 0.65
SS18-209ENST00000578595 SLITRK4Q8IW52 837 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 OR4D9Q8NGE8 314 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 GPR150Q8NGU9 434 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 JPH3Q8WXH2 748 aaPredicted RBP19.09■□□□□ 0.65
SS18-209ENST00000578595 PEX13Q92968 403 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 NAF1Q96HR8 494 aaKnown RBP19.09■□□□□ 0.65
SS18-209ENST00000578595 DPYSL5Q9BPU6 564 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 CCM2Q9BSQ5 444 aa19.09■□□□□ 0.65
SS18-209ENST00000578595 KMT2BQ9UMN6 2715 aaPredicted RBP19.08■□□□□ 0.65
SS18-209ENST00000578595 A0A1W2PNU3 283 aaPredicted RBP19.08■□□□□ 0.64
SS18-209ENST00000578595 F8W8V4 182 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 TLX3O43711 291 aaPredicted RBP19.08■□□□□ 0.64
SS18-209ENST00000578595 SGTAO43765 313 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 UBXN7O94888 489 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 AP2A2O94973 939 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 FTH1P02794 183 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 OR56A5P0C7T3 313 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 MTHFD1P11586 935 aaKnown RBP19.08■□□□□ 0.64
SS18-209ENST00000578595 ITIH1P19827 911 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 CSTF2P33240 577 aaKnown RBP eCLIP19.08■□□□□ 0.64
SS18-209ENST00000578595 LIMK2P53671 638 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 PCBP4P57723 403 aaKnown RBP19.08■□□□□ 0.64
SS18-209ENST00000578595 ACVR1Q04771 509 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 BOP1Q14137 746 aaKnown RBP19.08■□□□□ 0.64
SS18-209ENST00000578595 C16orf72Q14CZ0 275 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 RPE65Q16518 533 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 METRNLQ641Q3 311 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 CERS6Q6ZMG9 384 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 LRRC69Q6ZNQ3 347 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 LDB1Q86U70 411 aaPredicted RBP19.08■□□□□ 0.64
SS18-209ENST00000578595 RBM12BQ8IXT5 1001 aaKnown RBP19.08■□□□□ 0.64
SS18-209ENST00000578595 LILRA3Q8N6C8 439 aaPredicted RBP19.08■□□□□ 0.64
SS18-209ENST00000578595 FGF11Q92914 225 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 ZNF578Q96N58 590 aaPredicted RBP19.08■□□□□ 0.64
SS18-209ENST00000578595 COG4Q9H9E3 785 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 XAB2Q9HCS7 855 aaKnown RBP19.08■□□□□ 0.64
SS18-209ENST00000578595 PCDHGA8Q9Y5G5 932 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 PRSS21Q9Y6M0 314 aa19.08■□□□□ 0.64
SS18-209ENST00000578595 AHCTF1Q8WYP5 2266 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 IFRD1O00458 451 aaPredicted RBP19.07■□□□□ 0.64
SS18-209ENST00000578595 CD3EAPO15446 510 aaKnown RBP19.07■□□□□ 0.64
SS18-209ENST00000578595 RRP8O43159 456 aaKnown RBP19.07■□□□□ 0.64
SS18-209ENST00000578595 OR1I1O60431 355 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 VAPBO95292 243 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 CAPNS1P04632 268 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 ITGB6P18564 788 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 PAMP19021 973 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 PSMA3P25788 255 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 PREPP48147 710 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 ZFP36L1Q07352 338 aaKnown RBP19.07■□□□□ 0.64
SS18-209ENST00000578595 TMEM71Q6P5X7 295 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 PACS1Q6VY07 963 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 ZNF574Q6ZN55 896 aaPredicted RBP19.07■□□□□ 0.64
SS18-209ENST00000578595 FAM129CQ86XR2 697 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 CREG2Q8IUH2 290 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 PPIL6Q8IXY8 311 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 SPDYE1Q8NFV5 336 aaPredicted RBP19.07■□□□□ 0.64
SS18-209ENST00000578595 ELMO1Q92556 727 aa19.07■□□□□ 0.64
SS18-209ENST00000578595 ZNF669Q96BR6 464 aaPredicted RBP19.07■□□□□ 0.64
SS18-209ENST00000578595 MFSD3Q96ES6 412 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms