RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 TFAP2AP05549 437 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 PAX1P15863 534 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 TCEA1P23193 301 aaKnown RBP4.96□□□□□ -1.62
NUP88-213ENST00000576862 NR2F2P24468 414 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 HOXD13P35453 343 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 SUOXP51687 545 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 DRG2P55039 364 aaKnown RBP4.96□□□□□ -1.62
NUP88-213ENST00000576862 MLLT10P55197 1068 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 PPP2R2BQ00005 443 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 DMP1Q13316 513 aaPredicted RBP4.96□□□□□ -1.62
NUP88-213ENST00000576862 DLG2Q15700 870 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 CCNYL2Q5T2Q4 361 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 FAM205BPQ63HN1 556 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 PCGF5Q86SE9 256 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 ARID3BQ8IVW6 561 aaPredicted RBP4.96□□□□□ -1.62
NUP88-213ENST00000576862 C17orf77Q96MU5 243 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 DACH2Q96NX9 599 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 SLC22A12Q96S37 553 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 DDOQ99489 341 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 HGH1Q9BTY7 390 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 VPS33BQ9H267 617 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 SEMA6AQ9H2E6 1030 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 SMARCAD1Q9H4L7 1026 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 TFB2MQ9H5Q4 396 aaKnown RBP4.96□□□□□ -1.62
NUP88-213ENST00000576862 MBNL1Q9NR56 388 aaKnown RBP4.96□□□□□ -1.62
NUP88-213ENST00000576862 TBC1D22BQ9NU19 505 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 PNMA2Q9UL42 364 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 EXO1Q9UQ84 846 aaKnown RBP4.96□□□□□ -1.62
NUP88-213ENST00000576862 YIPF1Q9Y548 306 aa4.96□□□□□ -1.62
NUP88-213ENST00000576862 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.96□□□□□ -1.62
NUP88-213ENST00000576862 GREB1LQ9C091 1923 aaPredicted RBP4.95□□□□□ -1.62
NUP88-213ENST00000576862 A6NCN8 305 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 MITFO75030 526 aaPredicted RBP4.95□□□□□ -1.62
NUP88-213ENST00000576862 GH2P01242 217 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 TUBBP07437 444 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 FGF5P12034 268 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 EIF5P55010 431 aaKnown RBP4.95□□□□□ -1.62
NUP88-213ENST00000576862 MRPS5P82675 430 aaKnown RBP4.95□□□□□ -1.62
NUP88-213ENST00000576862 MBTD1Q05BQ5 628 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 DUSP28Q4G0W2 176 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 RAB41Q5JT25 222 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 HYIQ5T013 277 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 ZDHHC20Q5W0Z9 365 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 PLA2G4FQ68DD2 849 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 ANO5Q75V66 913 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 EPHX4Q8IUS5 362 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 PPP4R1Q8TF05 950 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 LRRC59Q96AG4 307 aaKnown RBP4.95□□□□□ -1.62
NUP88-213ENST00000576862 SYNCQ9H7C4 482 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 DNAJC18Q9H819 358 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.95□□□□□ -1.62
NUP88-213ENST00000576862 DNAJB4Q9UDY4 337 aa4.95□□□□□ -1.62
NUP88-213ENST00000576862 CTTNBP2Q8WZ74 1663 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 TEX13DA0A0J9YY54 714 aaPredicted RBP4.94□□□□□ -1.62
NUP88-213ENST00000576862 A0A1W2PPI3 338 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 BMP10O95393 424 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 LIPFP07098 398 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 KRT19P08727 400 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 MMP9P14780 707 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 NMBRP28336 390 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 GLIPR1P48060 266 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 MMP15P51511 669 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 MC1RQ01726 317 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 CREB5Q02930 508 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 KIR2DS3Q14952 304 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 MAPRE1Q15691 268 aaKnown RBP4.94□□□□□ -1.62
NUP88-213ENST00000576862 PACS1Q6VY07 963 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 SZRD1Q7Z422 152 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 LONP2Q86WA8 852 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 RDM1Q8NG50 284 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 SMPDL3BQ92485 455 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 FAM120BQ96EK7 910 aaKnown RBP4.94□□□□□ -1.62
NUP88-213ENST00000576862 MDFICQ9P1T7 246 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 SUCLA2Q9P2R7 463 aaPredicted RBP4.94□□□□□ -1.62
NUP88-213ENST00000576862 SEC63Q9UGP8 760 aaKnown RBP4.94□□□□□ -1.62
NUP88-213ENST00000576862 ZNF215Q9UL58 517 aaPredicted RBP4.94□□□□□ -1.62
NUP88-213ENST00000576862 NUP153P49790 1475 aaKnown RBP4.94□□□□□ -1.62
NUP88-213ENST00000576862 KIAA0556O60303 1618 aa4.94□□□□□ -1.62
NUP88-213ENST00000576862 WDR81Q562E7 1941 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 MTUS2Q5JR59 1369 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 EPRSP07814 1512 aaKnown RBP4.93□□□□□ -1.62
NUP88-213ENST00000576862 PAPSS1O43252 624 aaPredicted RBP4.93□□□□□ -1.62
NUP88-213ENST00000576862 GJB3O75712 270 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 RSL1D1O76021 490 aaKnown RBP4.93□□□□□ -1.62
NUP88-213ENST00000576862 CFC1BP0CG36 223 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 CFC1P0CG37 223 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 PRLRP16471 622 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 BDNFP23560 247 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 MFAP4P55083 255 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 GAGE2BQ13066 116 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 KCNC3Q14003 757 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 RBM39Q14498 530 aaKnown RBP4.93□□□□□ -1.62
NUP88-213ENST00000576862 MEA1Q16626 185 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 GAGE2EQ4V326 116 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 FAM109BQ6ICB4 259 aaPredicted RBP4.93□□□□□ -1.62
NUP88-213ENST00000576862 GAGE2AQ6NT46 116 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 ZNF449Q6P9G9 518 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 AACSQ86V21 672 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 PTOV1Q86YD1 416 aa4.93□□□□□ -1.62
NUP88-213ENST00000576862 MCEMP1Q8IX19 187 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms