RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 OR5K3A6NET4 321 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 TLCD2A6NGC4 264 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 OR2AG2A6NM03 316 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 CST8O60676 142 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 PDGFAP04085 211 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 NTRK1P04629 796 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 TNNT1P13805 278 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 HLA-DPA1P20036 260 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 COMTP21964 271 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 MLLT10P55197 1068 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 LAMB3Q13751 1172 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 PLCL1Q15111 1095 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 DNTTIP2Q5QJE6 756 aaKnown RBP20.59■□□□□ 0.89
VPS53-216ENST00000574029 D2HGDHQ8N465 521 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 BLOC1S5Q8TDH9 187 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 VAT1Q99536 393 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 TRIM55Q9BYV6 548 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 NHEJ1Q9H9Q4 299 aaPredicted RBP20.59■□□□□ 0.89
VPS53-216ENST00000574029 FGF21Q9NSA1 209 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 ABHD10Q9NUJ1 306 aa20.59■□□□□ 0.89
VPS53-216ENST00000574029 IMP3Q9NV31 184 aaKnown RBP20.59■□□□□ 0.89
VPS53-216ENST00000574029 KLHL8Q9P2G9 620 aaPredicted RBP20.59■□□□□ 0.89
VPS53-216ENST00000574029 BUD23O43709 281 aaKnown RBP20.58■□□□□ 0.89
VPS53-216ENST00000574029 DNAJB5O75953 348 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 PTPN4P29074 926 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 TNNT3P45378 269 aaPredicted RBP20.58■□□□□ 0.89
VPS53-216ENST00000574029 ARL4DP49703 201 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 HSD11B2P80365 405 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 ADCY2Q08462 1091 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 MPP3Q13368 585 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 UGT8Q16880 541 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 FAM199XQ6PEV8 388 aaPredicted RBP20.58■□□□□ 0.89
VPS53-216ENST00000574029 SPOCD1Q6ZMY3 1216 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 ZNF567Q8N184 647 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 ZFPM2Q8WW38 1151 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 THAP4Q8WY91 577 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 CCDC42Q96M95 316 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 PSMG3-AS1Q96PY0 264 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 INSM2Q96T92 566 aaPredicted RBP20.58■□□□□ 0.89
VPS53-216ENST00000574029 HRASLS2Q9NWW9 162 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 PKP3Q9Y446 797 aa20.58■□□□□ 0.89
VPS53-216ENST00000574029 UBA6A0AVT1 1052 aaPredicted RBP20.57■□□□□ 0.88
VPS53-216ENST00000574029 SPOPO43791 374 aa20.57■□□□□ 0.88
VPS53-216ENST00000574029 XRCC4Q13426 336 aa20.57■□□□□ 0.88
VPS53-216ENST00000574029 LONRF2Q1L5Z9 754 aa20.57■□□□□ 0.88
VPS53-216ENST00000574029 FNBP1LQ5T0N5 605 aa20.57■□□□□ 0.88
VPS53-216ENST00000574029 KAZNQ674X7 775 aa20.57■□□□□ 0.88
VPS53-216ENST00000574029 PID1Q7Z2X4 250 aa20.57■□□□□ 0.88
VPS53-216ENST00000574029 SYVN1Q86TM6 617 aa20.57■□□□□ 0.88
VPS53-216ENST00000574029 ZC3H18Q86VM9 953 aaKnown RBP20.57■□□□□ 0.88
VPS53-216ENST00000574029 BEND7Q8N7W2 519 aaPredicted RBP20.57■□□□□ 0.88
VPS53-216ENST00000574029 IPMKQ8NFU5 416 aa20.57■□□□□ 0.88
VPS53-216ENST00000574029 P3H4Q92791 437 aa20.57■□□□□ 0.88
VPS53-216ENST00000574029 ANP32EQ9BTT0 268 aa20.57■□□□□ 0.88
VPS53-216ENST00000574029 WWP1Q9H0M0 922 aa20.57■□□□□ 0.88
VPS53-216ENST00000574029 INTUQ9ULD6 942 aa20.57■□□□□ 0.88
VPS53-216ENST00000574029 CFAP20Q9Y6A4 193 aaKnown RBP20.57■□□□□ 0.88
VPS53-216ENST00000574029 TNRC6AQ8NDV7 1962 aaKnown RBP20.57■□□□□ 0.88
VPS53-216ENST00000574029 MGAT4DA6NG13 374 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 F5H423 210 aaPredicted RBP20.56■□□□□ 0.88
VPS53-216ENST00000574029 PSTPIP1O43586 416 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 CPNE3O75131 537 aaKnown RBP20.56■□□□□ 0.88
VPS53-216ENST00000574029 MSH3P20585 1137 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 PBLDP30039 288 aaPredicted RBP20.56■□□□□ 0.88
VPS53-216ENST00000574029 RPS18P62269 152 aaKnown RBP20.56■□□□□ 0.88
VPS53-216ENST00000574029 RPS15P62841 145 aaKnown RBP20.56■□□□□ 0.88
VPS53-216ENST00000574029 TUBB4BP68371 445 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 TUBB2AQ13885 445 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 LLGL1Q15334 1064 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 TFDP3Q5H9I0 405 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 ZNF517Q6ZMY9 492 aaPredicted RBP20.56■□□□□ 0.88
VPS53-216ENST00000574029 OOSP2Q86WS3 158 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 CARFQ8N187 725 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 OR2L2Q8NH16 312 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 OR8K5Q8NH50 307 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 ZNF398Q8TD17 642 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 ZNF501Q96CX3 271 aaPredicted RBP20.56■□□□□ 0.88
VPS53-216ENST00000574029 TUBB2BQ9BVA1 445 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 SLC24A2Q9UI40 661 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 ACSL5Q9ULC5 683 aa20.56■□□□□ 0.88
VPS53-216ENST00000574029 SPENQ96T58 3664 aaKnown RBP20.56■□□□□ 0.88
VPS53-216ENST00000574029 NBASA2RRP1 2371 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 KLHL33A6NCF5 533 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 CBFA2T2O43439 604 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 SCRG1O75711 98 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 ZBTB11O95625 1053 aaPredicted RBP20.55■□□□□ 0.88
VPS53-216ENST00000574029 AKT1P31749 480 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 PDE1BQ01064 536 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 PTPRCAPQ14761 206 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 GPR19Q15760 415 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 DUS1LQ6P1R4 473 aaKnown RBP20.55■□□□□ 0.88
VPS53-216ENST00000574029 C12orf66Q96MD2 445 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 QKIQ96PU8 341 aaKnown RBP eCLIP20.55■□□□□ 0.88
VPS53-216ENST00000574029 KIR3DX1Q9H7L2 352 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 MLXIPLQ9NP71 852 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 LATS2Q9NRM7 1088 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 KCND1Q9NSA2 647 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 TRHDEQ9UKU6 1024 aa20.55■□□□□ 0.88
VPS53-216ENST00000574029 FARSAQ9Y285 508 aaKnown RBP20.55■□□□□ 0.88
VPS53-216ENST00000574029 PCDHGA9Q9Y5G4 932 aaKnown RBP20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms