RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 ZNF623O75123 536 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 PRSS23O95084 383 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 ZNF865P0CJ78 1059 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-207ENST00000572253 ZFP36L2P47974 494 aaKnown RBP10.62□□□□□ -0.71
CCDC40-207ENST00000572253 PLA2G16P53816 162 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 DDR2Q16832 855 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 RFX4Q33E94 735 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 ARTNQ5T4W7 220 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 CIR1Q86X95 450 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-207ENST00000572253 SPARTQ8N0X7 666 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 FBXO32Q969P5 355 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 ESAMQ96AP7 390 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 TRNAU1APQ9NX07 287 aaKnown RBP10.62□□□□□ -0.71
CCDC40-207ENST00000572253 ADGRE2Q9UHX3 823 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 Q9Y3F1 56 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 POLR3HQ9Y535 204 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-207ENST00000572253 CAPN1P07384 714 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 PRSS56P0CW18 603 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 G6PDP11413 515 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 HOXB6P17509 224 aaKnown RBP10.62□□□□□ -0.71
CCDC40-207ENST00000572253 SERPINB10P48595 397 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 ZNF140P52738 457 aaPredicted RBP10.62□□□□□ -0.71
CCDC40-207ENST00000572253 PURAQ00577 322 aaKnown RBP10.62□□□□□ -0.71
CCDC40-207ENST00000572253 ZRANB3Q5FWF4 1079 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 SPESP1Q6UW49 350 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 SIDT2Q8NBJ9 832 aaKnown RBP10.62□□□□□ -0.71
CCDC40-207ENST00000572253 FEM1AQ9BSK4 669 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 ACTR8Q9H981 624 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 WDR37Q9Y2I8 494 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 ANGPTL3Q9Y5C1 460 aa10.62□□□□□ -0.71
CCDC40-207ENST00000572253 DRGXA6NNA5 263 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 HS6ST1O60243 411 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 SCELO95171 688 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 FUCA1P04066 466 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 RPLP2P05387 115 aaKnown RBP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 SLC2A4P14672 509 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 LPOP22079 712 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 MAD2L1Q13257 205 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 MTA1Q13330 715 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 CBX2Q14781 532 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 AP5B1Q2VPB7 878 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 PYCR3Q53H96 274 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 DLEU7Q6UYE1 221 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 NECAB2Q7Z6G3 386 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 DCBLD1Q8N8Z6 715 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 S100ZQ8WXG8 99 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 TANKQ92844 425 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 POP5Q969H6 163 aaKnown RBP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 FUBP3Q96I24 572 aaKnown RBP eCLIP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 CCDC115Q96NT0 180 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 SPON2Q9BUD6 331 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 SMPD4Q9NXE4 827 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 ITGB1BP2Q9UKP3 347 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 FNDC3AQ9Y2H6 1198 aaKnown RBP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 ARIH1Q9Y4X5 557 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 F5H5T6 163 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 M0R3G1 203 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 STX7O15400 261 aaKnown RBP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 SULT1C4O75897 302 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 OTCP00480 354 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 TRIM32Q13049 653 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 TAS2R42Q7RTR8 314 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 SLC13A3Q8WWT9 602 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 ISG20Q96AZ6 181 aaKnown RBP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 MS4A4AQ96JQ5 239 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 C8orf48Q96LL4 319 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 NODALQ96S42 347 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 GORASP2Q9H8Y8 452 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 SMURF2Q9HAU4 748 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 IKZF3Q9UKT9 509 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 PCDHB5Q9Y5E4 795 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 NIPSNAP2O75323 286 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 DGKQP52824 942 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 ERVPABLB-1P60509 514 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 MAPKAPK3Q16644 382 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 MEP1AQ16819 746 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 XAF1Q6GPH4 301 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 IGFN1Q86VF2 1251 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 CHDHQ8NE62 594 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 ABHD11Q8NFV4 315 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 SLC22A17Q8WUG5 538 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 FUNDC2Q9BWH2 189 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 TLR8Q9NR97 1041 aaKnown RBP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 USE1Q9NZ43 259 aa10.61□□□□□ -0.71
CCDC40-207ENST00000572253 UBA2Q9UBT2 640 aaPredicted RBP10.61□□□□□ -0.71
CCDC40-207ENST00000572253 ELOVL7A1L3X0 281 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 UPK1AO00322 258 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 MUSKO15146 869 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 SERPINB7O75635 380 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 GJB3O75712 270 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 HOXC8P31273 242 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 CYP4F3Q08477 520 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 SELPLGQ14242 412 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 Q6ZSR9 355 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 MILR1Q7Z6M3 343 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 ADAMTSL2Q86TH1 951 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 CHCHD4Q8N4Q1 142 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 LPCAT1Q8NF37 534 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 OR5K1Q8NHB7 308 aa10.6□□□□□ -0.71
CCDC40-207ENST00000572253 CDK15Q96Q40 435 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms