RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PKP3Q9Y446 797 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 PCDHB3Q9Y5E6 796 aa22.46■■□□□ 1.19
VPS53-211ENST00000571805 LDLRP01130 860 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 CA5AP35218 305 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 PYCR3Q53H96 274 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 HABP4Q5JVS0 413 aaKnown RBP22.45■■□□□ 1.18
VPS53-211ENST00000571805 CYP20A1Q6UW02 462 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 PRR23BQ6ZRT6 265 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 FRA10AC1Q70Z53 315 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 LYSMD3Q7Z3D4 306 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 ADAMTSL2Q86TH1 951 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 SEPHS2Q99611 448 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 TSEN34Q9BSV6 310 aaKnown RBP22.45■■□□□ 1.18
VPS53-211ENST00000571805 CHID1Q9BWS9 393 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 LIN28AQ9H9Z2 209 aaKnown RBP22.45■■□□□ 1.18
VPS53-211ENST00000571805 SMPD3Q9NY59 655 aaPredicted RBP22.45■■□□□ 1.18
VPS53-211ENST00000571805 TRPM5Q9NZQ8 1165 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 TSR3Q9UJK0 312 aaKnown RBP22.45■■□□□ 1.18
VPS53-211ENST00000571805 PCDHB1Q9Y5F3 818 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 FADS3Q9Y5Q0 445 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 SLC30A1Q9Y6M5 507 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 C2orf78A6NCI8 922 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 CLOCKO15516 846 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 MT-ND1P03886 318 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 CNPP09543 421 aaKnown RBP22.45■■□□□ 1.18
VPS53-211ENST00000571805 RPS9P46781 194 aaKnown RBP22.45■■□□□ 1.18
VPS53-211ENST00000571805 BIRC2Q13490 618 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 SELPLGQ14242 412 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 ABRAXAS2Q15018 415 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 AAK1Q2M2I8 961 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 GLYATQ6IB77 296 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 MAGEE1Q9HCI5 957 aa22.45■■□□□ 1.18
VPS53-211ENST00000571805 TBKBP1A7MCY6 615 aa22.44■■□□□ 1.18
VPS53-211ENST00000571805 RSL1D1O76021 490 aaKnown RBP22.44■■□□□ 1.18
VPS53-211ENST00000571805 SEC24DO94855 1032 aaPredicted RBP22.44■■□□□ 1.18
VPS53-211ENST00000571805 EFEMP2O95967 443 aa22.44■■□□□ 1.18
VPS53-211ENST00000571805 CTPS1P17812 591 aa22.44■■□□□ 1.18
VPS53-211ENST00000571805 CAPGP40121 348 aa22.44■■□□□ 1.18
VPS53-211ENST00000571805 TRAF3Q13114 568 aa22.44■■□□□ 1.18
VPS53-211ENST00000571805 RFTN2Q52LD8 501 aaPredicted RBP22.44■■□□□ 1.18
VPS53-211ENST00000571805 ATXN7L2Q5T6C5 722 aaPredicted RBP22.44■■□□□ 1.18
VPS53-211ENST00000571805 ZNF783Q6ZMS7 281 aa22.44■■□□□ 1.18
VPS53-211ENST00000571805 DHRSXQ8N5I4 330 aa22.44■■□□□ 1.18
VPS53-211ENST00000571805 PPM1MQ96MI6 270 aa22.44■■□□□ 1.18
VPS53-211ENST00000571805 SEZ6LQ9BYH1 1024 aa22.44■■□□□ 1.18
VPS53-211ENST00000571805 GPR63Q9BZJ6 419 aa22.44■■□□□ 1.18
VPS53-211ENST00000571805 FCF1Q9Y324 198 aaKnown RBP22.44■■□□□ 1.18
VPS53-211ENST00000571805 CCL27Q9Y4X3 112 aa22.44■■□□□ 1.18
VPS53-211ENST00000571805 NEUROG3Q9Y4Z2 214 aa22.44■■□□□ 1.18
VPS53-211ENST00000571805 GAPDHSO14556 408 aaPredicted RBP22.43■■□□□ 1.18
VPS53-211ENST00000571805 FFAR2O15552 330 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 ALPIP09923 528 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 VARSP26640 1264 aaKnown RBP22.43■■□□□ 1.18
VPS53-211ENST00000571805 ARL1P40616 181 aaPredicted RBP22.43■■□□□ 1.18
VPS53-211ENST00000571805 KIAA0040Q15053 153 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 AP5B1Q2VPB7 878 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 TBPL2Q6SJ96 375 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 CERS6Q6ZMG9 384 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 PDPRQ8NCN5 879 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 MAGEE2Q8TD90 523 aaPredicted RBP22.43■■□□□ 1.18
VPS53-211ENST00000571805 FEM1AQ9BSK4 669 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 CIPCQ9C0C6 399 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 IPPKQ9H8X2 491 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 STOML2Q9UJZ1 356 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 OR51B4Q9Y5P0 310 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 ARVCFO00192 962 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 TAPBPO15533 448 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 KATNA1O75449 491 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 DGKQP52824 942 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 RHOAP61586 193 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 NR6A1Q15406 480 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 ZBED5Q49AG3 693 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 USP51Q70EK9 711 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 PATL1Q86TB9 770 aaKnown RBP22.43■■□□□ 1.18
VPS53-211ENST00000571805 DTWD1Q8N5C7 304 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 OSCP1Q8WVF1 389 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 PIH1D2Q8WWB5 315 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 NSMCE2Q96MF7 247 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 CGREF1Q99674 301 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 NTN4Q9HB63 628 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 ELOVL2Q9NXB9 296 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 MAGEL2Q9UJ55 1249 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 V9GYQ6 96 aa22.43■■□□□ 1.18
VPS53-211ENST00000571805 KLHL33A6NCF5 533 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 SNAP29O95721 258 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 ADARB1P78563 741 aaKnown RBP22.42■■□□□ 1.18
VPS53-211ENST00000571805 GPR141Q7Z602 305 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 SERPINA9Q86WD7 417 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 CARNMT1Q8N4J0 409 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 RNF145Q96MT1 663 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 BOCQ9BWV1 1114 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 MRPL9Q9BYD2 267 aaKnown RBP22.42■■□□□ 1.18
VPS53-211ENST00000571805 NSUN3Q9H649 340 aaKnown RBP22.42■■□□□ 1.18
VPS53-211ENST00000571805 PHF24Q9UPV7 400 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 POLR3HQ9Y535 204 aaPredicted RBP22.42■■□□□ 1.18
VPS53-211ENST00000571805 ANAPC1Q9H1A4 1944 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 H0Y626 953 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 IFRD1O00458 451 aaPredicted RBP22.42■■□□□ 1.18
VPS53-211ENST00000571805 GLUD1P00367 558 aa22.42■■□□□ 1.18
VPS53-211ENST00000571805 OTCP00480 354 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms