RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 KLHL8Q9P2G9 620 aaPredicted RBP16.49■□□□□ 0.23
CLN3-211ENST00000564091 NOTCH2Q04721 2471 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 UBA6A0AVT1 1052 aaPredicted RBP16.48■□□□□ 0.23
CLN3-211ENST00000564091 GAPDHSO14556 408 aaPredicted RBP16.48■□□□□ 0.23
CLN3-211ENST00000564091 SPOPO43791 374 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 RECKO95980 971 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 EPOP01588 193 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 TPM3P06753 285 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 GP1BBP13224 206 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 SLC1A1P43005 524 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 CD97P48960 835 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 ACY1Q03154 408 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 SEMA5AQ13591 1074 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 FNBP1LQ5T0N5 605 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 CYB5D1Q6P9G0 228 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 KLHL35Q6PF15 583 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 FBXO38Q6PIJ6 1188 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 PID1Q7Z2X4 250 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 GLT6D1Q7Z4J2 308 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 ZC3H18Q86VM9 953 aaKnown RBP16.48■□□□□ 0.23
CLN3-211ENST00000564091 ATCAYQ86WG3 371 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 ZNF567Q8N184 647 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 DDHD1Q8NEL9 900 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 DTX3LQ8TDB6 740 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 HAUS1Q96CS2 278 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 ZNF514Q96K75 400 aaPredicted RBP16.48■□□□□ 0.23
CLN3-211ENST00000564091 CCDC42Q96M95 316 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 FCRL5Q96RD9 977 aa16.48■□□□□ 0.23
CLN3-211ENST00000564091 OR5K3A6NET4 321 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 DDX3YO15523 660 aaKnown RBP16.47■□□□□ 0.23
CLN3-211ENST00000564091 MTHFD1P11586 935 aaKnown RBP16.47■□□□□ 0.23
CLN3-211ENST00000564091 PTPN4P29074 926 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 TNNT3P45378 269 aaPredicted RBP16.47■□□□□ 0.23
CLN3-211ENST00000564091 ARCN1P48444 511 aaKnown RBP16.47■□□□□ 0.23
CLN3-211ENST00000564091 CHAF1BQ13112 559 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 XRCC4Q13426 336 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 TFDP2Q14188 446 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 SLC1A5Q15758 541 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 TAZQ16635 292 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 METRNLQ641Q3 311 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 CPZQ66K79 652 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 SPOCD1Q6ZMY3 1216 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 APLFQ8IW19 511 aaPredicted RBP16.47■□□□□ 0.23
CLN3-211ENST00000564091 D2HGDHQ8N465 521 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 SPDYE1Q8NFV5 336 aaPredicted RBP16.47■□□□□ 0.23
CLN3-211ENST00000564091 ZNF398Q8TD17 642 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 PPM1MQ96MI6 270 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 FCRL4Q96PJ5 515 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 GPR87Q9BY21 358 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 WWP1Q9H0M0 922 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 ABHD10Q9NUJ1 306 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 HACD3Q9P035 362 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 FAM8A1Q9UBU6 413 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 PKP3Q9Y446 797 aa16.47■□□□□ 0.23
CLN3-211ENST00000564091 DNMT3AQ9Y6K1 912 aaPredicted RBP16.47■□□□□ 0.23
CLN3-211ENST00000564091 SPTAN1Q13813 2472 aaKnown RBP16.47■□□□□ 0.23
CLN3-211ENST00000564091 BLACEA4D250 179 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 TLCD2A6NGC4 264 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 MSH3P20585 1137 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 AKT1P31749 480 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 RPS15P62841 145 aaKnown RBP16.46■□□□□ 0.23
CLN3-211ENST00000564091 HSD11B2P80365 405 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 ITGA9Q13797 1035 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 GPR19Q15760 415 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 UGT8Q16880 541 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 LONRF2Q1L5Z9 754 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 PRAMEF17Q5VTA0 474 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 BPHLQ86WA6 291 aaPredicted RBP16.46■□□□□ 0.23
CLN3-211ENST00000564091 P3H4Q92791 437 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 MR1Q95460 341 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 C12orf66Q96MD2 445 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 PSMG3-AS1Q96PY0 264 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 CD180Q99467 661 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 GOLPH3Q9H4A6 298 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 C10orf88Q9H8K7 445 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.46■□□□□ 0.23
CLN3-211ENST00000564091 FARSAQ9Y285 508 aaKnown RBP16.46■□□□□ 0.23
CLN3-211ENST00000564091 ARL5AQ9Y689 179 aa16.46■□□□□ 0.23
CLN3-211ENST00000564091 RP1L1Q8IWN7 2480 aaPredicted RBP16.46■□□□□ 0.23
CLN3-211ENST00000564091 OR6C74A6NCV1 312 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 MGAT4DA6NG13 374 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 ARGFXA6NJG6 315 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 TTLL8A6PVC2 850 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 STX7O15400 261 aaKnown RBP16.45■□□□□ 0.22
CLN3-211ENST00000564091 SCRG1O75711 98 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 PRAMEF1O95521 474 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 AGTP01019 485 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 HLA-DPA1P20036 260 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 UQCRFS1P47985 274 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 CCL11P51671 97 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 TUBB4BP68371 445 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 GPS2Q13227 327 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 IL10RAQ13651 578 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 TUBB2AQ13885 445 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 TRIM14Q14142 442 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 OOSP2Q86WS3 158 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 KMT5CQ86Y97 462 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 TMEM126BQ8IUX1 230 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 SLC38A9Q8NBW4 561 aa16.45■□□□□ 0.22
CLN3-211ENST00000564091 THAP4Q8WY91 577 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms