RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 IL24Q13007 206 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 GPS1Q13098 491 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 RPS6KA2Q15349 733 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 KYNUQ16719 465 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 FAM110CQ1W6H9 321 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 KLHL40Q2TBA0 621 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 ZACNQ401N2 412 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 CTXN3Q4LDR2 81 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 HERC4Q5GLZ8 1057 aaPredicted RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 FBXO47Q5MNV8 452 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 C6orf183Q5T699 404 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 LCE1AQ5T7P2 110 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 MAP3K21Q5TCX8 1036 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 METTL21CQ5VZV1 264 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 SCYL2Q6P3W7 929 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 GGT6Q6P531 493 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 NOTUMQ6P988 496 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 C4orf22Q6V702 233 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 ZNF813Q6ZN06 617 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 MSANTD1Q6ZTZ1 278 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 TOM1L2Q6ZVM7 507 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 ADGRG6Q86SQ4 1221 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 TLK2Q86UE8 772 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 TICAM1Q8IUC6 712 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 IQCKQ8N0W5 287 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 KRT78Q8N1N4 520 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 CSGALNACT2Q8N6G5 542 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 ZBTB34Q8NCN2 500 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 STKLD1Q8NE28 680 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 OR52M1Q8NGK5 317 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 CREB3L4Q8TEY5 395 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 HASPINQ8TF76 798 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 SLC44A1Q8WWI5 657 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 TMEM41AQ96HV5 264 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 MRGPRX1Q96LB2 322 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 VPS35Q96QK1 796 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 ACO2Q99798 780 aaKnown RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 EFHD1Q9BUP0 239 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 SORBS1Q9BX66 1292 aaKnown RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 KCNN2Q9H2S1 579 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 VCXQ9H320 206 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 EBF2Q9HAK2 575 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 SERHLQ9NQF3 203 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 EIF2B3Q9NR50 452 aaKnown RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 ARHGEF3Q9NR81 526 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 FBXO28Q9NVF7 368 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 SHOC2Q9UQ13 582 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 SH2B3Q9UQQ2 575 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 HEY1Q9Y5J3 304 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 ARHGAP31Q2M1Z3 1444 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 EIF3AQ14152 1382 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 IGSF1Q8N6C5 1336 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 A0A1W2PRV1 198 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 SYCE3A1L190 88 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 FUOMA2VDF0 154 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 GSAPA4D1B5 854 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 TRPC5OSA6NMA1 111 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 A8MXE2 369 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 PRR23D1E9PI22 279 aaPredicted RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 ZNF197O14709 1029 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 SLC9A3R1O14745 358 aaPredicted RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 PPM1DO15297 605 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 FFAR2O15552 330 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 DENRO43583 198 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 PPP6R2O75170 966 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 TBX10O75333 385 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 TRIM3O75382 744 aaPredicted RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 SPAG6O75602 509 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 SERPINB7O75635 380 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 CIB2O75838 187 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 CDK14O94921 469 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 KRT75O95678 551 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 SCGB1D1O95968 90 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 IGFBP1P08833 259 aaPredicted RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 PRR23D2P0DMB1 279 aaPredicted RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 CSH1P0DML2 217 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 CSH2P0DML3 217 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 ACADMP11310 421 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 NDUFB7P17568 137 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 GP5P40197 560 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 MAGEA11P43364 429 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 CRKLP46109 303 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 PIP4K2AP48426 406 aaPredicted RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 AGFG1P52594 562 aaKnown RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 CASP9P55211 416 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 WNT3P56703 355 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 LILRA4P59901 499 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 KRTAP10-6P60371 365 aaPredicted RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 HNRNPKP61978 463 aaKnown RBP eCLIP5.05□□□□□ -1.6
VPS35-205ENST00000563984 MC1RQ01726 317 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 GLO1Q04760 184 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 PMS2P3Q13401 168 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 POLD3Q15054 466 aaPredicted RBP5.05□□□□□ -1.6
VPS35-205ENST00000563984 ANGPT1Q15389 498 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 DLGAP5Q15398 846 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 SEC23BQ15437 767 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 PFKFB4Q16877 469 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 ANO6Q4KMQ2 910 aa5.05□□□□□ -1.6
VPS35-205ENST00000563984 GPAT3Q53EU6 434 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms