RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 PIK3CGP48736 1102 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 RGS21Q2M5E4 152 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 SPATS1Q496A3 300 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 GDF6Q6KF10 455 aaPredicted RBP13.04□□□□□ -0.32
CLN3-210ENST00000563874 IGFN1Q86VF2 1251 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 GPSM1Q86YR5 675 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 PARP8Q8N3A8 854 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 OR10Q1Q8NGQ4 319 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 PNPT1Q8TCS8 783 aaKnown RBP13.04□□□□□ -0.32
CLN3-210ENST00000563874 NRBF2Q96F24 287 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 CCDC138Q96M89 665 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 AMBRA1Q9C0C7 1298 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 RIC8BQ9NVN3 520 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 VAPAQ9P0L0 249 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 LIMD1Q9UGP4 676 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 RABL2BQ9UNT1 228 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 PCDHB3Q9Y5E6 796 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 U3KQV3 271 aa13.04□□□□□ -0.32
CLN3-210ENST00000563874 GNGT2O14610 69 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 GPR182O15218 404 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 B4GALT3O60512 393 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 SERPINB7O75635 380 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 MLYCDO95822 493 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 CST1P01037 141 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 HOXB8P17481 243 aaPredicted RBP13.03□□□□□ -0.32
CLN3-210ENST00000563874 OPRL1P41146 370 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 CTU2Q2VPK5 515 aaKnown RBP13.03□□□□□ -0.32
CLN3-210ENST00000563874 RFTN2Q52LD8 501 aaPredicted RBP13.03□□□□□ -0.32
CLN3-210ENST00000563874 C10orf120Q5SQS8 335 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 SULT1C3Q6IMI6 304 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 CYP20A1Q6UW02 462 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 SPESP1Q6UW49 350 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 RBM23Q86U06 439 aaKnown RBP13.03□□□□□ -0.32
CLN3-210ENST00000563874 TMCO5AQ8N6Q1 288 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 MDGA1Q8NFP4 955 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 OR10A6Q8NH74 314 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 RAB2BQ8WUD1 216 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 ITCHQ96J02 903 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 SPON2Q9BUD6 331 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 THUMPD3Q9BV44 507 aaKnown RBP13.03□□□□□ -0.32
CLN3-210ENST00000563874 FUNDC2Q9BWH2 189 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 NUSAP1Q9BXS6 441 aaKnown RBP13.03□□□□□ -0.32
CLN3-210ENST00000563874 RAD21L1Q9H4I0 556 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 FAM118AQ9NWS6 357 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 ZIM2Q9NZV7 527 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 ZMYM5Q9UJ78 669 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 PADI3Q9ULW8 664 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 COMMD10Q9Y6G5 202 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 SLC12A8A0AV02 714 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 TSPAN12O95859 305 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 IDUAP35475 653 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 PTGR1Q14914 329 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 CRY1Q16526 586 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 PERM1Q5SV97 790 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 GTF2IRD2BQ6EKJ0 949 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 CRTC3Q6UUV7 619 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 GTF2IRD2Q86UP8 949 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 EFHBQ8N7U6 833 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 ATAD1Q8NBU5 361 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 LEMD2Q8NC56 503 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 OR7D4Q8NG98 312 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 CHPT1Q8WUD6 406 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 PTPN18Q99952 460 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 SGIP1Q9BQI5 828 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 NEURL2Q9BR09 285 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 KATNAL1Q9BW62 490 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 IKZF5Q9H5V7 419 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 HPS4Q9NQG7 708 aa13.03□□□□□ -0.32
CLN3-210ENST00000563874 TRMT6Q9UJA5 497 aaKnown RBP13.03□□□□□ -0.32
CLN3-210ENST00000563874 COL4A4P53420 1690 aaPredicted RBP13.03□□□□□ -0.32
CLN3-210ENST00000563874 GSTA4O15217 222 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 ADAM23O75077 832 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 SULT1C4O75897 302 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 GRIK2Q13002 908 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 TUSC3Q13454 348 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 DPY19L1Q2PZI1 675 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 ABHD11Q8NFV4 315 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 SDCCAG3Q96C92 435 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 BTN2A3PQ96KV6 586 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 ZNF583Q96ND8 569 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 FNIP2Q9P278 1114 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 FKBPLQ9UIM3 349 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 ST14Q9Y5Y6 855 aa13.02□□□□□ -0.32
CLN3-210ENST00000563874 BCAS1O75363 584 aaPredicted RBP13.02□□□□□ -0.33
CLN3-210ENST00000563874 GMNNO75496 209 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 INMTO95050 263 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 NDST3O95803 873 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 GGT1P19440 569 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 CDH3P22223 829 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 HTR1BP28222 390 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 ZNF140P52738 457 aaPredicted RBP13.02□□□□□ -0.33
CLN3-210ENST00000563874 ARPP19P56211 112 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 CD47Q08722 323 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 KCNAB2Q13303 367 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 AP5B1Q2VPB7 878 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 C6orf141Q5SZD1 244 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 ATP6V0D2Q8N8Y2 350 aa13.02□□□□□ -0.33
CLN3-210ENST00000563874 CHDHQ8NE62 594 aaPredicted RBP13.02□□□□□ -0.33
CLN3-210ENST00000563874 TRUB1Q8WWH5 349 aaKnown RBP13.02□□□□□ -0.33
CLN3-210ENST00000563874 MBOAT4Q96T53 435 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms