RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 LDB2O43679 373 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 RAD1O60671 282 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 RASSF9O75901 435 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 MC4RP32245 332 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 CAPZBP47756 277 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 ARSDP51689 593 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 FOXM1Q08050 763 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 SRSF6Q13247 344 aaKnown RBP16.5■□□□□ 0.23
CLK3-210ENST00000563112 PLCL1Q15111 1095 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 BCL7AQ4VC05 210 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 KCTD11Q693B1 232 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 FAM83HQ6ZRV2 1179 aaPredicted RBP16.5■□□□□ 0.23
CLK3-210ENST00000563112 NXPE1Q8N323 547 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 OR2L2Q8NH16 312 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 RTP4Q96DX8 246 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 ARHGAP9Q9BRR9 750 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 IMP3Q9NV31 184 aaKnown RBP16.5■□□□□ 0.23
CLK3-210ENST00000563112 PCDHGA4Q9Y5G9 962 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 ATMQ13315 3056 aa16.5■□□□□ 0.23
CLK3-210ENST00000563112 ZNF106Q9H2Y7 1883 aaKnown RBP16.5■□□□□ 0.23
CLK3-210ENST00000563112 AP2A1O95782 977 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 GAS8O95995 478 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 SLC35G4P0C7Q5 338 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 TPH1P17752 444 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 MAP4P27816 1152 aaKnown RBP16.49■□□□□ 0.23
CLK3-210ENST00000563112 SEPHS1P49903 392 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 GDF10P55107 478 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 SEPT6Q14141 434 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 RPS6KA1Q15418 735 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 ZRANB3Q5FWF4 1079 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 CACHD1Q5VU97 1274 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 IRGCQ6NXR0 463 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 XKR5Q6UX68 686 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 TAS2R42Q7RTR8 314 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 TAB3Q8N5C8 712 aaPredicted RBP16.49■□□□□ 0.23
CLK3-210ENST00000563112 RSC1A1Q92681 617 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 LINC00615Q96LM1 132 aaPredicted RBP16.49■□□□□ 0.23
CLK3-210ENST00000563112 RAB33BQ9H082 229 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 WWP1Q9H0M0 922 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 TRIT1Q9H3H1 467 aaKnown RBP16.49■□□□□ 0.23
CLK3-210ENST00000563112 FAM96AQ9H5X1 160 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 NLE1Q9NVX2 485 aaPredicted RBP16.49■□□□□ 0.23
CLK3-210ENST00000563112 FAM8A1Q9UBU6 413 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 EPHA6Q9UF33 1036 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 ZNF148Q9UQR1 794 aa16.49■□□□□ 0.23
CLK3-210ENST00000563112 ERI2A8K979 691 aaKnown RBP16.48■□□□□ 0.23
CLK3-210ENST00000563112 ITGB2P05107 769 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 MTHFD1P11586 935 aaKnown RBP16.48■□□□□ 0.23
CLK3-210ENST00000563112 ATP1B2P14415 290 aaPredicted RBP16.48■□□□□ 0.23
CLK3-210ENST00000563112 LEPRP48357 1165 aaKnown RBP16.48■□□□□ 0.23
CLK3-210ENST00000563112 LMAN1P49257 510 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 LY6DQ14210 128 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 KRT33BQ14525 404 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 GSE1Q14687 1217 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 POU6F1Q14863 301 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 CYB5D1Q6P9G0 228 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 ZNF449Q6P9G9 518 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 PRSS42Q7Z5A4 293 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 SLC13A5Q86YT5 568 aaPredicted RBP16.48■□□□□ 0.23
CLK3-210ENST00000563112 CFAP206Q8IYR0 622 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 NLGN4XQ8N0W4 816 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 NLGN4YQ8NFZ3 816 aaPredicted RBP16.48■□□□□ 0.23
CLK3-210ENST00000563112 GPR150Q8NGU9 434 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 STYXQ8WUJ0 223 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 ZFPM2Q8WW38 1151 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 ATG4AQ8WYN0 398 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 KIAA1143Q96AT1 154 aaPredicted RBP16.48■□□□□ 0.23
CLK3-210ENST00000563112 DNAJC1Q96KC8 554 aaKnown RBP16.48■□□□□ 0.23
CLK3-210ENST00000563112 C12orf66Q96MD2 445 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 INSM2Q96T92 566 aaPredicted RBP16.48■□□□□ 0.23
CLK3-210ENST00000563112 CCM2Q9BSQ5 444 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 EFHD1Q9BUP0 239 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 ZNF768Q9H5H4 540 aaKnown RBP16.48■□□□□ 0.23
CLK3-210ENST00000563112 VPS37BQ9H9H4 285 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 APMAPQ9HDC9 416 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 ZDHHC3Q9NYG2 299 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 PILRAQ9UKJ1 303 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 COLEC10Q9Y6Z7 277 aa16.48■□□□□ 0.23
CLK3-210ENST00000563112 C17orf113A0A1B0GUU1 675 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 E7EVH7 732 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 H7C0S8 307 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 CCL22O00626 93 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 LIASO43766 372 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 C1QL1O75973 258 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 IFNB1P01574 187 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 POLBP06746 335 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 CCDC175P0C221 793 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 FDFT1P37268 417 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 PRLHRP49683 370 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 LAMB3Q13751 1172 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 SKIDA1Q1XH10 827 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 FAM92BQ6ZTR7 304 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 SERPINA9Q86WD7 417 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 ZNF843Q8N446 348 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 DNAAF3Q8N9W5 541 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 HM13Q8TCT9 377 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 UBXN4Q92575 508 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 MED8Q96G25 268 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 CDKN2AIPNLQ96HQ2 116 aa16.47■□□□□ 0.23
CLK3-210ENST00000563112 SIDT1Q9NXL6 827 aaKnown RBP16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms