RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 PRLHRP49683 370 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 CCNG1P51959 295 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 ERVK-8P63133 956 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 KCNJ2P63252 427 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 BTKQ06187 659 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 PCDH1Q08174 1060 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 GBX1Q14549 363 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 SHHQ15465 462 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 SMAD1Q15797 465 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 CCDC6Q16204 474 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 PDCD2Q16342 344 aaPredicted RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 RBBP7Q16576 425 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 PPP1R3AQ16821 1122 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 FBXO43Q4G163 708 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 TMEM52BQ4KMG9 183 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 AASDHQ4L235 1098 aaPredicted RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 UNC50Q53HI1 259 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 ARSIQ5FYB1 569 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 SAMD4BQ5PRF9 694 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 C1orf146Q5VVC0 180 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 IRAK1BP1Q5VVH5 260 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 NEK5Q6P3R8 708 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 TMEM207Q6UWW9 146 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 TMC5Q6UXY8 1006 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 BNC2Q6ZN30 1099 aaPredicted RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 ERN2Q76MJ5 926 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 ADGRG6Q86SQ4 1221 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 RBM23Q86U06 439 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 LDB1Q86U70 411 aaPredicted RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 KLHDC8AQ8IYD2 350 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 LSMEM2Q8N112 164 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 AADATQ8N5Z0 425 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 BEND7Q8N7W2 519 aaPredicted RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 SIDT2Q8NBJ9 832 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 RBM15BQ8NDT2 890 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 FAM13CQ8NE31 585 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 CATSPER1Q8NEC5 780 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 OR6K2Q8NGY2 324 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 ITFG1Q8TB96 612 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 CSGALNACT1Q8TDX6 532 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 EEF1AKMT1Q8WVE0 214 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 ING5Q8WYH8 240 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 DNASE1L2Q92874 299 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 AP2M1Q96CW1 435 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 DTD2Q96FN9 168 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 LINC00615Q96LM1 132 aaPredicted RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 ZBTB18Q99592 522 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 SH3GL1Q99961 368 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 EBF4Q9BQW3 602 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 EFHD1Q9BUP0 239 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 TRMT61BQ9BVS5 477 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 PBX4Q9BYU1 374 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 SMG9Q9H0W8 520 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 VCXQ9H320 206 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 TMEM245Q9H330 911 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 SLC32A1Q9H598 525 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 ZNF385DQ9H6B1 395 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 C8orf33Q9H7E9 229 aaPredicted RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 RMI1Q9H9A7 625 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 CYP4F12Q9HCS2 524 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 BPIFA1Q9NP55 256 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 SARS2Q9NP81 518 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 C8orf4Q9NR00 106 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 ASIC5Q9NY37 505 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 GPRC5BQ9NZH0 403 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 THAP10Q9P2Z0 257 aaPredicted RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 PTBP2Q9UKA9 531 aaKnown RBP7.4□□□□□ -1.22
VPS39-204ENST00000561818 PPM1HQ9ULR3 514 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 MED16Q9Y2X0 877 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 ACTL7AQ9Y615 435 aa7.4□□□□□ -1.22
VPS39-204ENST00000561818 GBF1Q92538 1859 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 KIF26AQ9ULI4 1882 aaPredicted RBP7.39□□□□□ -1.23
VPS39-204ENST00000561818 NPIPB8E9PQR5 432 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 CCL22O00626 93 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 E2F3O00716 465 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 ANGPT2O15123 496 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 BNIP3LO60238 219 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 CDK14O94921 469 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 SLCO2B1O94956 709 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 KAT7O95251 611 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 C1SP09871 688 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 ADRB3P13945 408 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 HGFP14210 728 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 TIMP2P16035 220 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 LHCGRP22888 699 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 EPHA3P29320 983 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 SERPINB1P30740 379 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 GCKP35557 465 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 NUDT1P36639 197 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 CTSOP43234 321 aaPredicted RBP7.39□□□□□ -1.23
VPS39-204ENST00000561818 RPIAP49247 311 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 KCNK10P57789 538 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 ACTR3P61158 418 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 NTHL1P78549 312 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 PHEXP78562 749 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 TIAL1Q01085 375 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS39-204ENST00000561818 BNIP2Q12982 314 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 CUL3Q13618 768 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 ENPP2Q13822 863 aa7.39□□□□□ -1.23
VPS39-204ENST00000561818 GTF2H2Q13888 395 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms