RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 QKIQ96PU8 341 aaKnown RBP eCLIP11.39□□□□□ -0.59
USP3-220ENST00000561381 RUFY1Q96T51 708 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 MAP3K3Q99759 626 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 GORASP1Q9BQQ3 440 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 TRABDQ9H4I3 376 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 AKIRIN1Q9H9L7 192 aaPredicted RBP11.39□□□□□ -0.59
USP3-220ENST00000561381 EPHA6Q9UF33 1036 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 RSPH14Q9UHP6 348 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 ARL5AQ9Y689 179 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 KCNMB2Q9Y691 235 aa11.39□□□□□ -0.59
USP3-220ENST00000561381 AKR1B15C9JRZ8 316 aaPredicted RBP11.38□□□□□ -0.59
USP3-220ENST00000561381 MTSS1O43312 755 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 HLA-DPA1P20036 260 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 HALP42357 657 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 DMPKQ09013 629 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 TBX2Q13207 712 aaPredicted RBP11.38□□□□□ -0.59
USP3-220ENST00000561381 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.38□□□□□ -0.59
USP3-220ENST00000561381 CRTC2Q53ET0 693 aaPredicted RBP11.38□□□□□ -0.59
USP3-220ENST00000561381 LACTB2Q53H82 288 aaPredicted RBP11.38□□□□□ -0.59
USP3-220ENST00000561381 LDLRAP1Q5SW96 308 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 FNBP1LQ5T0N5 605 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 ZDHHC20Q5W0Z9 365 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 PWWP2BQ6NUJ5 590 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 MICALCLQ6ZW33 695 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 PPP1R3BQ86XI6 285 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 CCDC50Q8IVM0 306 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 DTX3LQ8TDB6 740 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 CT55Q8WUE5 264 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 SLC41A2Q96JW4 573 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 APOL2Q9BQE5 337 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 FICDQ9BVA6 458 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 HEMGNQ9BXL5 484 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 ZCCHC2Q9C0B9 1178 aaKnown RBP11.38□□□□□ -0.59
USP3-220ENST00000561381 RAB33BQ9H082 229 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 IMP3Q9NV31 184 aaKnown RBP11.38□□□□□ -0.59
USP3-220ENST00000561381 HACD3Q9P035 362 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 SEMA5BQ9P283 1151 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 FAM8A1Q9UBU6 413 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 TP53TG5Q9Y2B4 290 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 PKP3Q9Y446 797 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 KCTD3Q9Y597 815 aa11.38□□□□□ -0.59
USP3-220ENST00000561381 CDC14CA4D256 554 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 GOLGA6L3A6NEY3 463 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 STX7O15400 261 aaKnown RBP11.37□□□□□ -0.59
USP3-220ENST00000561381 KCNJ13O60928 360 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 ZRANB2O95218 330 aaKnown RBP eCLIP11.37□□□□□ -0.59
USP3-220ENST00000561381 PRAMEF1O95521 474 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 EBLN1P0CF75 366 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 MTHFD1P11586 935 aaKnown RBP11.37□□□□□ -0.59
USP3-220ENST00000561381 RBL1P28749 1068 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 AKT1P31749 480 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 MAGEA1P43355 309 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 TNNT3P45378 269 aaPredicted RBP11.37□□□□□ -0.59
USP3-220ENST00000561381 HADHBP55084 474 aaKnown RBP11.37□□□□□ -0.59
USP3-220ENST00000561381 MPP3Q13368 585 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 TUBB3Q13509 450 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 DNASE1L3Q13609 305 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 ITGA9Q13797 1035 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 PLCL1Q15111 1095 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 METRNLQ641Q3 311 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 CNGA4Q8IV77 575 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 KATNAL2Q8IYT4 538 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 RCOR2Q8IZ40 523 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 LILRA3Q8N6C8 439 aaPredicted RBP11.37□□□□□ -0.59
USP3-220ENST00000561381 SIDT2Q8NBJ9 832 aaKnown RBP11.37□□□□□ -0.59
USP3-220ENST00000561381 ZNF398Q8TD17 642 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 PPM1MQ96MI6 270 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 INSM2Q96T92 566 aaPredicted RBP11.37□□□□□ -0.59
USP3-220ENST00000561381 VAT1Q99536 393 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 FSD1LQ9BXM9 530 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 WWP1Q9H0M0 922 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 TSPY26PQ9H489 355 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 LHX9Q9NQ69 397 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 ANAPC2Q9UJX6 822 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 RARRES3Q9UL19 164 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 PADI1Q9ULC6 663 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 PCDHB3Q9Y5E6 796 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 COL12A1Q99715 3063 aa11.37□□□□□ -0.59
USP3-220ENST00000561381 PIPSLA2A3N6 862 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 HACD1B0YJ81 288 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 H7C0C1 242 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 DDX3YO15523 660 aaKnown RBP11.36□□□□□ -0.59
USP3-220ENST00000561381 SGTAO43765 313 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 CREG1O75629 220 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 DNAJB5O75953 348 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 NTRK1P04629 796 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 CCNYL3P0C7X3 344 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 MSH3P20585 1137 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 ATP5OP48047 213 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 ARCN1P48444 511 aaKnown RBP11.36□□□□□ -0.59
USP3-220ENST00000561381 RPS18P62269 152 aaKnown RBP11.36□□□□□ -0.59
USP3-220ENST00000561381 XRCC4Q13426 336 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 SEPT6Q14141 434 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 LONRF2Q1L5Z9 754 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 FAM199XQ6PEV8 388 aaPredicted RBP11.36□□□□□ -0.59
USP3-220ENST00000561381 FBXO38Q6PIJ6 1188 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 BBS12Q6ZW61 710 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 DAAM2Q86T65 1068 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 TC2NQ8N9U0 490 aa11.36□□□□□ -0.59
USP3-220ENST00000561381 OR4K2Q8NGD2 314 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms