RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 EPB41L1Q9H4G0 881 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 PRDM8Q9NQV8 689 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 INTS10Q9NVR2 710 aaKnown RBP12.76□□□□□ -0.37
NEDD8-208ENST00000560427 GRHL1Q9NZI5 618 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 GNPTGQ9UJJ9 305 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 WASF3Q9UPY6 502 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 PCDHB1Q9Y5F3 818 aa12.76□□□□□ -0.37
NEDD8-208ENST00000560427 MED19A0JLT2 244 aaPredicted RBP12.75□□□□□ -0.37
NEDD8-208ENST00000560427 H3BMM5 538 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 NTN3O00634 580 aaPredicted RBP12.75□□□□□ -0.37
NEDD8-208ENST00000560427 LIN7AO14910 233 aaPredicted RBP12.75□□□□□ -0.37
NEDD8-208ENST00000560427 EML2O95834 649 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 ESR1P03372 595 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 BRAFP15056 766 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 ELK3P41970 407 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 EPHA4P54764 986 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 GPLD1P80108 840 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 MRPS25P82663 173 aaKnown RBP12.75□□□□□ -0.37
NEDD8-208ENST00000560427 HHEXQ03014 270 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 ZNF658BQ4V348 819 aaPredicted RBP12.75□□□□□ -0.37
NEDD8-208ENST00000560427 MSS51Q4VC12 460 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 CCDC157Q569K6 752 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 HES3Q5TGS1 186 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 CDCP2Q5VXM1 449 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 STEAP4Q687X5 459 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 ZNF470Q6ECI4 717 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 FAM83HQ6ZRV2 1179 aaPredicted RBP12.75□□□□□ -0.37
NEDD8-208ENST00000560427 SPRED1Q7Z699 444 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 TRIM48Q8IWZ4 208 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 PATE1Q8WXA2 126 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 ART4Q93070 314 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 PANX3Q96QZ0 392 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 DPYSL5Q9BPU6 564 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 P2RY12Q9H244 342 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 COG4Q9H9E3 785 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 C20orf96Q9NUD7 363 aaPredicted RBP12.75□□□□□ -0.37
NEDD8-208ENST00000560427 CPNE7Q9UBL6 633 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 ZC3H7BQ9UGR2 993 aaKnown RBP12.75□□□□□ -0.37
NEDD8-208ENST00000560427 ANGPTL2Q9UKU9 493 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 NEUROG3Q9Y4Z2 214 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 TEX264Q9Y6I9 313 aa12.75□□□□□ -0.37
NEDD8-208ENST00000560427 LILRA5A6NI73 299 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 KPNA5O15131 536 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 OR1I1O60431 355 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 VIPP01282 170 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 RPLP0P05388 317 aaKnown RBP12.74□□□□□ -0.37
NEDD8-208ENST00000560427 RPL10P27635 214 aaKnown RBP12.74□□□□□ -0.37
NEDD8-208ENST00000560427 NDUFS1P28331 727 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 PBLDP30039 288 aaPredicted RBP12.74□□□□□ -0.37
NEDD8-208ENST00000560427 CD151P48509 253 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 PDIA2Q13087 525 aaKnown RBP12.74□□□□□ -0.37
NEDD8-208ENST00000560427 SQSTM1Q13501 440 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 SPIDRQ14159 915 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 SEPT7Q16181 437 aaKnown RBP12.74□□□□□ -0.37
NEDD8-208ENST00000560427 RBM44Q6ZP01 1051 aaKnown RBP12.74□□□□□ -0.37
NEDD8-208ENST00000560427 KIAA0408Q6ZU52 694 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 KCNMB4Q86W47 210 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 SFTPA2Q8IWL1 248 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 CNTN4Q8IWV2 1026 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 CHCHD4Q8N4Q1 142 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 DCBLD1Q8N8Z6 715 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 ZFPM2Q8WW38 1151 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 LPGAT1Q92604 370 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 CXorf40BQ96DE9 158 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 CERS2Q96G23 380 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 DEPDC7Q96QD5 511 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 SLC38A3Q99624 504 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 TRIM56Q9BRZ2 755 aaKnown RBP12.74□□□□□ -0.37
NEDD8-208ENST00000560427 LRRC1Q9BTT6 524 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 CARD6Q9BX69 1037 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 LRRN3Q9H3W5 708 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 EPB41L5Q9HCM4 733 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 CLCA2Q9UQC9 943 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 CHMP2BQ9UQN3 213 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 HEBP2Q9Y5Z4 205 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 PRSS21Q9Y6M0 314 aa12.74□□□□□ -0.37
NEDD8-208ENST00000560427 GOLGA4Q13439 2230 aaKnown RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 ZFC3H1O60293 1989 aaKnown RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 GOLGA8KD6RF30 607 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 GOLGA8TH3BQL2 631 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 TMX2-CTNND1H3BSU7 103 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 IFRD1O00458 451 aaPredicted RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 PPM1DO15297 605 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 HYAL3O43820 417 aaPredicted RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 ZNF500O60304 480 aaPredicted RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 MT-CO3P00414 261 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 MTHFD1P11586 935 aaKnown RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 ILF2Q12905 390 aaKnown RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 TMED2Q15363 201 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 RPE65Q16518 533 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 SYTL3Q4VX76 610 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 PTRHD1Q6GMV3 140 aaKnown RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 XKR5Q6UX68 686 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 UNC5AQ6ZN44 842 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 CEP128Q6ZU80 1094 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 MICALCLQ6ZW33 695 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 GALNT7Q86SF2 657 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 LDB1Q86U70 411 aaPredicted RBP12.73□□□□□ -0.37
NEDD8-208ENST00000560427 CFAP206Q8IYR0 622 aa12.73□□□□□ -0.37
NEDD8-208ENST00000560427 NOA1Q8NC60 698 aaKnown RBP12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms