RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 Q6ZSR9 355 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 GLB1L3Q8NCI6 653 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-231ENST00000557433 OR2T12Q8NG77 320 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 OR5K1Q8NHB7 308 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 PPP1R13LQ8WUF5 828 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 LPPQ93052 612 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 C8orf48Q96LL4 319 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 PPP3R2Q96LZ3 170 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 TRIB3Q96RU7 358 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 MBOAT4Q96T53 435 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 GPR21Q99679 349 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 PSD2Q9BQI7 771 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 PAAF1Q9BRP4 392 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 FAM50BQ9Y247 325 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 PCDHGA8Q9Y5G5 932 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 ST14Q9Y5Y6 855 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 CPQQ9Y646 472 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 DOCK4Q8N1I0 1966 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 M0QX08 132 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 B4GAT1O43505 415 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 MRPS14O60783 128 aaKnown RBP16.06■□□□□ 0.16
SHMT2-231ENST00000557433 CNTN5O94779 1100 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 CST1P01037 141 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 PRDX3P30048 256 aaKnown RBP16.06■□□□□ 0.16
SHMT2-231ENST00000557433 TTPAP49638 278 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 PGFP49763 221 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 RAD23AP54725 363 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 PCBP2Q15366 365 aaKnown RBP eCLIP16.06■□□□□ 0.16
SHMT2-231ENST00000557433 PLA2G4EQ3MJ16 856 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 FBXL22Q6P050 247 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 DEFB132Q7Z7B7 95 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 RALGPS2Q86X27 583 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-231ENST00000557433 EID3Q8N140 333 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 FBLIM1Q8WUP2 373 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 FUBP3Q96I24 572 aaKnown RBP eCLIP16.06■□□□□ 0.16
SHMT2-231ENST00000557433 ZNF583Q96ND8 569 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 NODALQ96S42 347 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 NECTIN3Q9NQS3 549 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 TRNAU1APQ9NX07 287 aaKnown RBP16.06■□□□□ 0.16
SHMT2-231ENST00000557433 CD274Q9NZQ7 290 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 IKZF3Q9UKT9 509 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 PCDHB8Q9UN66 801 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 ORC6Q9Y5N6 252 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 V9GYQ6 96 aa16.06■□□□□ 0.16
SHMT2-231ENST00000557433 FAM92AA1XBS5 289 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 GOLGA8CPA6NN73 597 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 C2orf81A6NN90 581 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 ZNF99A8MXY4 864 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-231ENST00000557433 ANKRD28O15084 1053 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 SLC16A6O15403 523 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 OR4F21O95013 312 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 NTRK1P04629 796 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 RETP07949 1114 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 TCF3P15923 654 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 AKT1P31749 480 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 SLC16A12Q6ZSM3 486 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 HIPK1Q86Z02 1210 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 SETD9Q8NE22 299 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 KCNJ9Q92806 393 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 SLC47A1Q96FL8 570 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 RPL10LQ96L21 214 aaKnown RBP16.05■□□□□ 0.16
SHMT2-231ENST00000557433 PPM1MQ96MI6 270 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 C17orf80Q9BSJ5 609 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 AKIP1Q9NQ31 210 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 INIPQ9NRY2 104 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 GALPQ9UBC7 116 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 DOLKQ9UPQ8 538 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 USP22Q9UPT9 525 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 HSPE1-MOB4S4R3N1 261 aa16.05■□□□□ 0.16
SHMT2-231ENST00000557433 GNGT2O14610 69 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 NDUFS2O75306 463 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 GABARAPO95166 117 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 TSPAN12O95859 305 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ZNF865P0CJ78 1059 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ITGAMP11215 1152 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 PCSK2P16519 638 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 GRK3P35626 688 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 OPRL1P41146 370 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 HALP42357 657 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 AGTR2P50052 363 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 OXCT1P55809 520 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 MTPNP58546 118 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 GALNT3Q14435 633 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 PTPRNQ16849 979 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ZNF691Q5VV52 312 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 USP50Q70EL3 339 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-231ENST00000557433 CDYL2Q8N8U2 506 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ZNF548Q8NEK5 533 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-231ENST00000557433 METTL6Q8TCB7 284 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 TAMM41Q96BW9 452 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 PDLIM5Q96HC4 596 aaKnown RBP16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ALPK1Q96QP1 1244 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ACOX2Q99424 681 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 MGME1Q9BQP7 344 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ACTR8Q9H981 624 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 PDFQ9HBH1 243 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 ANKHQ9HCJ1 492 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 DAPK2Q9UIK4 370 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 NUDT5Q9UKK9 219 aa16.04■□□□□ 0.16
SHMT2-231ENST00000557433 LOC100130705A0A1B0GUX0 176 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms