RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	ADRA1B	P35368	520 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	HOXD12	P35452	270 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	TALDO1	P37837	337 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	HNF4A	P41235	474 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	NR4A2	P43354	598 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	BRCC3	P46736	316 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	RFX3	P48380	749 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	DGKE	P52429	567 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	RHD	Q02161	417 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CYP27C1	Q4G0S4	372 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	STEAP4	Q687X5	459 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	GOLGA7	Q7Z5G4	137 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	PLEKHH3	Q7Z736	793 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	IGFN1	Q86VF2	1251 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	C2CD4A	Q8NCU7	369 aa	Predicted RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	PTCD2	Q8WV60	388 aa	Known RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	RSPH1	Q8WYR4	309 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	PCED1B	Q96HM7	432 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	TTYH2	Q9BSA4	534 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	NAA50	Q9GZZ1	169 aa	Known RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZBTB20	Q9HC78	741 aa	Predicted RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CMAHP	Q9Y471	501 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	NRAP	Q86VF7	1730 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SMIM30	A4D0T7	59 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	KRBA1	A5PL33	1030 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	AQP12B	A6NM10	295 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SNTN	A6NMZ2	147 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005		H0YC42	278 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ULK1	O75385	1050 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CNTN5	O94779	1100 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	COL6A1	P12109	1028 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ATF4	P18848	351 aa	Predicted RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CTSK	P43235	329 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	GSK3B	P49841	420 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	PRKG2	Q13237	762 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CPSF6	Q16630	551 aa	Known RBP eCLIP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC10A6	Q3KNW5	377 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	GPR153	Q6NV75	609 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF467	Q7Z7K2	595 aa	Predicted RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ADGRG6	Q86SQ4	1221 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	LRRC49	Q8IUZ0	686 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	AQP12A	Q8IXF9	295 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	DEPDC4	Q8N2C3	294 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	C7orf57	Q8NEG2	295 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	OR4K2	Q8NGD2	314 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CENPI	Q92674	756 aa	Predicted RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	NSMCE3	Q96MG7	304 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ASB8	Q9H765	288 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	IPPK	Q9H8X2	491 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ING3	Q9NXR8	418 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	RIMS3	Q9UJD0	308 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CNOT11	Q9UKZ1	510 aa	Known RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	TMED5	Q9Y3A6	229 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	PCDHB5	Q9Y5E4	795 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ADAMTSL1	Q8N6G6	1762 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	PLOD2	O00469	737 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	TSPAN4	O14817	238 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	GRID2	O43424	1007 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	OR10H3	O60404	316 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CHRM5	P08912	532 aa	Predicted RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CYP3A5	P20815	502 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	GPC1	P35052	558 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	TTPA	P49638	278 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	UGT2B15	P54855	530 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	CDH12	P55289	794 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SULT2A1	Q06520	285 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ANKRD26P1	Q6NSI1	321 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	TCAIM	Q8N3R3	496 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	OR8H1	Q8NGG4	311 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	MZB1	Q8WU39	189 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	B3GALT6	Q96L58	329 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZNF778	Q96MU6	729 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	FCRL4	Q96PJ5	515 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	PARK7	Q99497	189 aa	Known RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	GPR22	Q99680	433 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	COLEC11	Q9BWP8	271 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	KAT8	Q9H7Z6	458 aa	Known RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZDHHC7	Q9NXF8	308 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	LSM7	Q9UK45	103 aa	Known RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ING4	Q9UNL4	249 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	LYVE1	Q9Y5Y7	322 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SLC25A14	O95258	325 aa	Predicted RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	IL6	P05231	212 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	GPR15	P49685	360 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ATP4B	P51164	291 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	DNAJB13	P59910	316 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ABAT	P80404	500 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SPCS2	Q15005	226 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	SMU1	Q2TAY7	513 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	BTBD16	Q32M84	506 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	FAM174B	Q3ZCQ3	159 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	KLHL12	Q53G59	568 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	NOL9	Q5SY16	702 aa	Known RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	PIWIL3	Q7Z3Z3	882 aa	Known RBP	4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ANKLE1	Q8NAG6	615 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	BTN2A2	Q8WVV5	523 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	PSMG2	Q969U7	264 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ZUFSP	Q96AP4	578 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	DIRAS2	Q96HU8	199 aa		4.92	□□□□□ -1.62
SYNE2-223	ENST00000557005	ALPK1	Q96QP1	1244 aa		4.92	□□□□□ -1.62

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