RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 IRF9Q00978 393 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 CDH17Q12864 832 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 KCNAB2Q13303 367 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 TUBB3Q13509 450 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 ANGPT1Q15389 498 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 TSC22D1Q15714 1073 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 FAM189A2Q15884 450 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 MS4A13Q5J8X5 152 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 RPS26P11Q5JNZ5 115 aaPredicted RBP5.04□□□□□ -1.6
TMEM260-210ENST00000556422 SLC30A6Q6NXT4 461 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 MAVSQ7Z434 540 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 KCNMB4Q86W47 210 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 CAMK1DQ8IU85 385 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 NUDCD3Q8IVD9 361 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 FAM126BQ8IXS8 530 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 ELMOD1Q8N336 334 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 TMEM151AQ8N4L1 468 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 ATPAF2Q8N5M1 289 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 DDX51Q8N8A6 666 aaKnown RBP eCLIP5.04□□□□□ -1.6
TMEM260-210ENST00000556422 OR10Z1Q8NGY1 313 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 OR6S1Q8NH40 331 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 RAB3IL1Q8TBN0 382 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 METTL21AQ8WXB1 218 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 SLC22A18Q96BI1 424 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 MRGPRX2Q96LB1 330 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 SERPINB11Q96P15 392 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 SORT1Q99523 831 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 EBF4Q9BQW3 602 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 TLE6Q9H808 572 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 CAB39LQ9H9S4 337 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 TXLNGQ9NUQ3 528 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 ARL8BQ9NVJ2 186 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 MARCOQ9UEW3 520 aaPredicted RBP5.04□□□□□ -1.6
TMEM260-210ENST00000556422 CRYL1Q9Y2S2 319 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 MTO1Q9Y2Z2 717 aaKnown RBP5.04□□□□□ -1.6
TMEM260-210ENST00000556422 DENND4CQ5VZ89 1909 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 XIRP2A4UGR9 3374 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 LTBP2Q14767 1821 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 NUPL2O15504 423 aaKnown RBP5.04□□□□□ -1.6
TMEM260-210ENST00000556422 IGLV3-27P01718 113 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 SBK3P0C264 359 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 PF4V1P10720 104 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 HAPLN1P10915 354 aaPredicted RBP5.04□□□□□ -1.6
TMEM260-210ENST00000556422 POU3F3P20264 500 aaPredicted RBP5.04□□□□□ -1.6
TMEM260-210ENST00000556422 ATP6V1C1P21283 382 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 FGFR3P22607 806 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 MAGEA11P43364 429 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 VEGFBP49765 207 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 PSMD5Q16401 504 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 FASTKD1Q53R41 847 aaKnown RBP5.04□□□□□ -1.6
TMEM260-210ENST00000556422 INTS11Q5TA45 600 aaKnown RBP5.04□□□□□ -1.6
TMEM260-210ENST00000556422 TPGS2Q68CL5 300 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 NAPEPLDQ6IQ20 393 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 KRT73Q86Y46 540 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 C10orf107Q8IVU9 208 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 MFSD6LQ8IWD5 586 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 CLEC4FQ8N1N0 589 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 FBXO15Q8NCQ5 510 aaPredicted RBP5.04□□□□□ -1.6
TMEM260-210ENST00000556422 ZNF248Q8NDW4 579 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 RFKQ969G6 155 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 ARMC5Q96C12 935 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 EGLN2Q96KS0 407 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 FTHL17Q9BXU8 183 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 PRKD2Q9BZL6 878 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 CCDC86Q9H6F5 360 aaKnown RBP5.04□□□□□ -1.6
TMEM260-210ENST00000556422 GLOD4Q9HC38 313 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.04□□□□□ -1.6
TMEM260-210ENST00000556422 OBP2AQ9NY56 170 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 COPG2Q9UBF2 871 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 SLC7A8Q9UHI5 535 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 CACNG2Q9Y698 323 aa5.04□□□□□ -1.6
TMEM260-210ENST00000556422 LOC101059915A0A1B0GWI6 518 aaPredicted RBP5.03□□□□□ -1.6
TMEM260-210ENST00000556422 MTMR11A4FU01 709 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 K7EPI3 171 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 ZNF195O14628 629 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 PROM1O43490 865 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 DNAJB6O75190 326 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 NDUFS6O75380 124 aaKnown RBP5.03□□□□□ -1.6
TMEM260-210ENST00000556422 EFEMP2O95967 443 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 IFNA16P05015 189 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 MMP2P08253 660 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 SELPP16109 830 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 MAP4P27816 1152 aaKnown RBP5.03□□□□□ -1.6
TMEM260-210ENST00000556422 CHRNA4P43681 627 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 NPY2RP49146 381 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 SLC11A1P49279 550 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 PTPRSQ13332 1948 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 CLCA4Q14CN2 919 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 HES5Q5TA89 166 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 FAM171A1Q5VUB5 890 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 FAM91A1Q658Y4 838 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 C1orf94Q6P1W5 598 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 RANBP10Q6VN20 620 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 TAS1R1Q7RTX1 841 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 TFAP2DQ7Z6R9 452 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 ZNF227Q86WZ6 799 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 CNTN4Q8IWV2 1026 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 UMODL1-AS1Q8N2C9 162 aa5.03□□□□□ -1.6
TMEM260-210ENST00000556422 VANGL1Q8TAA9 524 aaPredicted RBP5.03□□□□□ -1.6
TMEM260-210ENST00000556422 RAET1EQ8TD07 263 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms