RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 AKIP1Q9NQ31 210 aa12.11□□□□□ -0.47
SHMT2-207ENST00000553837 RGS13O14921 159 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 TPST1O60507 370 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 AOC2O75106 756 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 CHEK2O96017 543 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 MT-CO1P00395 513 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 GPIP06744 558 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 FDXRP22570 491 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 TCEA1P23193 301 aaKnown RBP12.1□□□□□ -0.47
SHMT2-207ENST00000553837 GSTM2P28161 218 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 SGSHP51688 502 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 FXNQ16595 210 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 PGS1Q32NB8 556 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 TIGD2Q4W5G0 525 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 UNC50Q53HI1 259 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 LCN8Q6JVE9 175 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 FUT10Q6P4F1 479 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 CRTC3Q6UUV7 619 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 NEK10Q6ZWH5 1172 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 BTLAQ7Z6A9 289 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 SUN5Q8TC36 379 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 MAGEE2Q8TD90 523 aaPredicted RBP12.1□□□□□ -0.47
SHMT2-207ENST00000553837 TRIB3Q96RU7 358 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 POLR1EQ9GZS1 481 aaKnown RBP12.1□□□□□ -0.47
SHMT2-207ENST00000553837 OLA1Q9NTK5 396 aaKnown RBP12.1□□□□□ -0.47
SHMT2-207ENST00000553837 INTS10Q9NVR2 710 aaKnown RBP12.1□□□□□ -0.47
SHMT2-207ENST00000553837 FKBP14Q9NWM8 211 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 ACTR3BQ9P1U1 418 aa12.1□□□□□ -0.47
SHMT2-207ENST00000553837 CHD5Q8TDI0 1954 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 C16orf96A6NNT2 1141 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 BBIP1A8MTZ0 92 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 H3BMM5 538 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 H3BNC9 293 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 CD3EAPO15446 510 aaKnown RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 BCAS1O75363 584 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 DEAF1O75398 565 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 GJB5O95377 273 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 RBP1P09455 135 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 HSD17B1P14061 328 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 CD1DP15813 335 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 KPNA2P52292 529 aaKnown RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 PLA2G16P53816 162 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 TPTEP56180 551 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 CTAG1AP78358 180 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 RING1Q06587 406 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 CBX2Q14781 532 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 OR4D1Q15615 310 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 ZNF678Q5SXM1 525 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 LHX8Q68G74 356 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 IL31Q6EBC2 164 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 XAF1Q6GPH4 301 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 PLEKHG7Q6ZR37 379 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 LRRC8DQ7L1W4 858 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 TSPAN17Q96FV3 270 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 SPATA17Q96L03 361 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 C3orf30Q96M34 536 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 EML4Q9HC35 981 aaKnown RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 IKZF3Q9UKT9 509 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 TMA7Q9Y2S6 64 aaKnown RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 SLC38A8A6NNN8 435 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 SIX3O95343 332 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 ALBP02768 609 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 RPL17P18621 184 aaKnown RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 IMPDH1P20839 514 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 MAPKAPK2P49137 400 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 CDH13P55290 713 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 YBEYP58557 167 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 RPS24P62847 133 aaKnown RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 SP3Q02447 781 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 ZNF235Q14590 738 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 PTPRRQ15256 657 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 INAVAQ3KP66 663 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 SETMARQ53H47 684 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 PITRM1Q5JRX3 1037 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 RBM48Q5RL73 367 aaKnown RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 FAM20CQ8IXL6 584 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 ADGRG5Q8IZF4 528 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 ELMOD1Q8N336 334 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 EXT2Q93063 718 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 EXOC2Q96KP1 924 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 ZBED2Q9BTP6 218 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.09□□□□□ -0.474e-7■■□□□ 13.4
SHMT2-207ENST00000553837 ING2Q9H160 280 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 FBRSL1Q9HCM7 1045 aaKnown RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 MTRRQ9UBK8 725 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 WARS2Q9UGM6 360 aaKnown RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 MED16Q9Y2X0 877 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 PTGDR2Q9Y5Y4 395 aa12.09□□□□□ -0.47
SHMT2-207ENST00000553837 ZFP37Q9Y6Q3 630 aaPredicted RBP12.09□□□□□ -0.47
SHMT2-207ENST00000553837 ATP6AP2A0A1C7CYW4 349 aa12.08□□□□□ -0.48
SHMT2-207ENST00000553837 ATP6AP2O75787 350 aa12.08□□□□□ -0.48
SHMT2-207ENST00000553837 DNAJB5O75953 348 aa12.08□□□□□ -0.48
SHMT2-207ENST00000553837 SNAP29O95721 258 aa12.08□□□□□ -0.48
SHMT2-207ENST00000553837 GLP2RO95838 553 aa12.08□□□□□ -0.48
SHMT2-207ENST00000553837 NTRK1P04629 796 aa12.08□□□□□ -0.48
SHMT2-207ENST00000553837 ENO2P09104 434 aaPredicted RBP12.08□□□□□ -0.48
SHMT2-207ENST00000553837 MTHFD2P13995 350 aa12.08□□□□□ -0.48
SHMT2-207ENST00000553837 ATP4BP51164 291 aa12.08□□□□□ -0.48
SHMT2-207ENST00000553837 DNASE1L3Q13609 305 aa12.08□□□□□ -0.48
SHMT2-207ENST00000553837 SKIV2LQ15477 1246 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms