RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 VAPAQ9P0L0 249 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ITGB1BP2Q9UKP3 347 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 UBA6A0AVT1 1052 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CCDC154A6NI56 674 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ARVCFO00192 962 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 EIF3FO00303 357 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 HOXC11O43248 304 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CST1P01037 141 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 MT-ND2P03891 347 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 RBP1P09455 135 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 FCGR1AP12314 374 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ITIH1P19827 911 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 PSMB9P28065 219 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CYP2C18P33260 490 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 GRK5P34947 590 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 HTR6P50406 440 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 POLR2JP52435 117 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 HNRNPFP52597 415 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 WNT3AP56704 352 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 LILRA4P59901 499 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 EMX2Q04743 252 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 GALNT1Q10472 559 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SLC14A2Q15849 920 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SETMARQ53H47 684 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 RBM48Q5RL73 367 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 MARCH8Q5T0T0 291 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CES5AQ6NT32 575 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 TAF2Q6P1X5 1199 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 FRA10AC1Q70Z53 315 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SYVN1Q86TM6 617 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CYP4Z1Q86W10 505 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 UNC93AQ86WB7 457 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 HEATR4Q86WZ0 1026 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 MMAAQ8IVH4 418 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 PHACTR4Q8IZ21 702 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 LINC01465Q8N7H1 131 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 BEND7Q8N7W2 519 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ATP6V0D2Q8N8Y2 350 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ARRDC4Q8NCT1 418 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 RHOXF1Q8NHV9 184 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ITFG1Q8TB96 612 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 EFHD2Q96C19 240 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 RHBDF1Q96CC6 855 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 YIPF6Q96EC8 236 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 TBATAQ96M53 351 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SMOQ99835 787 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 RNF38Q9H0F5 515 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ABHD16BQ9H3Z7 469 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 RUBCNLQ9H714 662 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 RMND5AQ9H871 391 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 NEK6Q9HC98 313 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CRTAC1Q9NQ79 661 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 RBM22Q9NW64 420 aaKnown RBP eCLIP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 NSMCE4AQ9NXX6 385 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 NAALAD2Q9Y3Q0 740 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 PCDHB14Q9Y5E9 798 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 RRN3P2A6NIE6 340 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CDC7O00311 574 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 PIRO00625 290 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 TNPO2O14787 897 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SCAMP3O14828 347 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SNPHO15079 494 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 NUAK1O60285 661 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SNX2O60749 519 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 EEDO75530 441 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 RFPL2O75678 378 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SLC22A3O75751 556 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 PRKD3O94806 890 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 DIRAS1O95057 198 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SEC24AO95486 1093 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 DLGAP3O95886 979 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 THP07101 528 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 MMP3P08254 477 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 FGF4P08620 206 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CDH1P12830 882 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 HOXD8P13378 290 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SCNN1AP37088 669 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CASP3P42574 277 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 BRCC3P46736 316 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CRISP3P54108 245 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 TPD52P55327 224 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 KCNK10P57789 538 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 DAOAP59103 153 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 MFSD10Q14728 455 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 SNX17Q15036 470 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 TRIP4Q15650 581 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 FXNQ16595 210 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 FSCN1Q16658 493 aaKnown RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 KIAA0930Q6ICG6 404 aaPredicted RBP4.79□□□□□ -1.64
LIMA1-214ENST00000552783 RGMBQ6NW40 437 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 PRMT9Q6P2P2 845 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 LYPD8Q6UX82 237 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 CXCL17Q6UXB2 119 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 Q6ZSR9 355 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ARMCX6Q7L4S7 300 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 GPR142Q7Z601 462 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 GALNT10Q86SR1 603 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 ADCK1Q86TW2 530 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 AKAP14Q86UN6 197 aa4.79□□□□□ -1.64
LIMA1-214ENST00000552783 TAC4Q86UU9 113 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms