RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 WDR53Q7Z5U6 358 aaPredicted RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 MRGPREQ86SM8 312 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 WDR63Q8IWG1 891 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 ABCA7Q8IZY2 2146 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 CCAR2Q8N163 923 aaKnown RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 ZNF276Q8N554 614 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 TMCO5AQ8N6Q1 288 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 SCAIQ8N9R8 606 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 ING5Q8WYH8 240 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 FAM3CQ92520 227 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 FGF13Q92913 245 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 VPS33AQ96AX1 596 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 SIPA1Q96FS4 1042 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 PERPQ96FX8 193 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 PGAM5Q96HS1 289 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 IGSF21Q96ID5 467 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 B3GALT6Q96L58 329 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 ADAD1Q96M93 576 aaKnown RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 RAB3IPQ96QF0 476 aaPredicted RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 BBS4Q96RK4 519 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 IWS1Q96ST2 819 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 MAP7D2Q96T17 732 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 MMS19Q96T76 1030 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 AIFM2Q9BRQ8 373 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 NUF2Q9BZD4 464 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 TMEM117Q9H0C3 514 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 ZNF768Q9H5H4 540 aaKnown RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 PRORYQ9H606 182 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 TMEM9BQ9NQ34 198 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 PXMP2Q9NR77 195 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 TMEM161AQ9NX61 479 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 KIAA1456Q9P272 454 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 SUCLA2Q9P2R7 463 aaPredicted RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 UPB1Q9UBR1 384 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 CTNNAL1Q9UBT7 734 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 DNAJB4Q9UDY4 337 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 IPO11Q9UI26 975 aaKnown RBP3.84□□□□□ -1.79
LIMA1-208ENST00000551691 TUBE1Q9UJT0 475 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 A4GNTQ9UNA3 340 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 STX8Q9UNK0 236 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 TNNQ9UQP3 1299 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 TNFSF13BQ9Y275 285 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 PCDHGB5Q9Y5G0 923 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 TRPV2Q9Y5S1 764 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 SNX5Q9Y5X3 404 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 PTPRCP08575 1304 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 ZBED9Q6R2W3 1325 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 IGSF9BQ9UPX0 1349 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 ZMYM2Q9UBW7 1377 aa3.84□□□□□ -1.79
LIMA1-208ENST00000551691 ITPR2Q14571 2701 aa3.84□□□□□ -1.8
LIMA1-208ENST00000551691 DOCK5Q9H7D0 1870 aa3.84□□□□□ -1.8
LIMA1-208ENST00000551691 ATG2BQ96BY7 2078 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 CSMD1Q96PZ7 3565 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 C2CD3Q4AC94 2353 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 BOD1L1Q8NFC6 3051 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 FRMD3A2A2Y4 597 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 TYW5A2RUC4 315 aaKnown RBP3.83□□□□□ -1.8
LIMA1-208ENST00000551691 MBLAC1A4D2B0 266 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-208ENST00000551691 TRABD2BA6NFA1 517 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 TRIM64A6NGJ6 449 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 TRIM64BA6NI03 449 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 A6NL46 340 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 USP17L23D6RBM5 183 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 MCIDASD6RGH6 385 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 F8W810 466 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 IPO8O15397 1037 aaKnown RBP3.83□□□□□ -1.8
LIMA1-208ENST00000551691 TEX28O15482 410 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 MSI1O43347 362 aaKnown RBP3.83□□□□□ -1.8
LIMA1-208ENST00000551691 KIF1CO43896 1103 aaKnown RBP3.83□□□□□ -1.8
LIMA1-208ENST00000551691 HS6ST1O60243 411 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 EXOC3O60645 756 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 ZC3H11AO75152 810 aaKnown RBP eCLIP3.83□□□□□ -1.8
LIMA1-208ENST00000551691 RPS6KA5O75582 802 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 SLC25A12O75746 678 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 BAG2O95816 211 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 QDPRP09417 244 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 CCDC192P0DO97 292 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 PCNAP12004 261 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 IGFBP2P18065 325 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 NR4A1P22736 598 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 HOXA13P31271 388 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-208ENST00000551691 GABRB2P47870 512 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 SLC11A1P49279 550 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 CFHR3Q02985 330 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 HNRNPA0Q13151 305 aaKnown RBP3.83□□□□□ -1.8
LIMA1-208ENST00000551691 MTX1Q13505 466 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 SCARB2Q14108 478 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 LY6DQ14210 128 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 GALNT3Q14435 633 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 KYNUQ16719 465 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 HIST2H2ACQ16777 129 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-208ENST00000551691 PFKFB3Q16875 520 aaPredicted RBP3.83□□□□□ -1.8
LIMA1-208ENST00000551691 PLK5Q496M5 336 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 SBK1Q52WX2 424 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 PCID2Q5JVF3 399 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 C10orf76Q5T2E6 689 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 GARNL3Q5VVW2 1013 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 TMEM268Q5VZI3 342 aa3.83□□□□□ -1.8
LIMA1-208ENST00000551691 KAZNQ674X7 775 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms