RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 APOBEC4Q8WW27 367 aaKnown RBP8.3□□□□□ -1.08
USP28-215ENST00000545608 KLHL6Q8WZ60 621 aa8.3□□□□□ -1.08
USP28-215ENST00000545608 CXorf40BQ96DE9 158 aa8.3□□□□□ -1.08
USP28-215ENST00000545608 ABHD17AQ96GS6 310 aa8.3□□□□□ -1.08
USP28-215ENST00000545608 OXNAD1Q96HP4 312 aaPredicted RBP8.3□□□□□ -1.08
USP28-215ENST00000545608 MRGPRX2Q96LB1 330 aa8.3□□□□□ -1.08
USP28-215ENST00000545608 SRPK1Q96SB4 655 aaKnown RBP8.3□□□□□ -1.08
USP28-215ENST00000545608 ULBP3Q9BZM4 244 aa8.3□□□□□ -1.08
USP28-215ENST00000545608 TSPAN10Q9H1Z9 355 aaPredicted RBP8.3□□□□□ -1.08
USP28-215ENST00000545608 EPN3Q9H201 632 aa8.3□□□□□ -1.08
USP28-215ENST00000545608 GOLPH3Q9H4A6 298 aa8.3□□□□□ -1.08
USP28-215ENST00000545608 TRABDQ9H4I3 376 aa8.3□□□□□ -1.08
USP28-215ENST00000545608 ZNF768Q9H5H4 540 aaKnown RBP8.3□□□□□ -1.08
USP28-215ENST00000545608 IL17CQ9P0M4 197 aa8.3□□□□□ -1.08
USP28-215ENST00000545608 EPHA6Q9UF33 1036 aa8.3□□□□□ -1.08
USP28-215ENST00000545608 CROTQ9UKG9 612 aa8.3□□□□□ -1.08
USP28-215ENST00000545608 ZFC3H1O60293 1989 aaKnown RBP8.3□□□□□ -1.08
USP28-215ENST00000545608 A6NJY4 79 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 K7EM74 188 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 GAPDHSO14556 408 aaPredicted RBP8.29□□□□□ -1.08
USP28-215ENST00000545608 SPOPO43791 374 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 KCNJ13O60928 360 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 NDUFA10O95299 355 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 TIAF1O95411 115 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 EPOP01588 193 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 FURINP09958 794 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 FGF5P12034 268 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 VCLP18206 1134 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 NELFEP18615 380 aaKnown RBP8.29□□□□□ -1.08
USP28-215ENST00000545608 PTMSP20962 102 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 DLSTP36957 453 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 SPAM1P38567 509 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 CAPZBP47756 277 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 DMPKQ09013 629 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 GTF2H3Q13889 308 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 ERV3-1Q14264 604 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 IL11RAQ14626 422 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 SLC1A5Q15758 541 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 IGFBP7Q16270 282 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 RPE65Q16518 533 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 GPRC6AQ5T6X5 926 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 IRGCQ6NXR0 463 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 TMEM220Q6QAJ8 160 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 FAM151BQ6UXP7 276 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 FAM83HQ6ZRV2 1179 aaPredicted RBP8.29□□□□□ -1.08
USP28-215ENST00000545608 CAPN12Q6ZSI9 719 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 PRSS42Q7Z5A4 293 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 ZC3H18Q86VM9 953 aaKnown RBP8.29□□□□□ -1.08
USP28-215ENST00000545608 AMZ2Q86W34 360 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 RASGRP3Q8IV61 690 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 RBM12BQ8IXT5 1001 aaKnown RBP8.29□□□□□ -1.08
USP28-215ENST00000545608 IPMKQ8NFU5 416 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 GPR150Q8NGU9 434 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 DTX3LQ8TDB6 740 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 BRSK1Q8TDC3 778 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 BLOC1S5Q8TDH9 187 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 HAUS1Q96CS2 278 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 ZDHHC12Q96GR4 267 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 TTC25Q96NG3 672 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 FCRL5Q96RD9 977 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 RAB33BQ9H082 229 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 C10orf88Q9H8K7 445 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 AKIRIN1Q9H9L7 192 aaPredicted RBP8.29□□□□□ -1.08
USP28-215ENST00000545608 SEMA5BQ9P283 1151 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 KLHL8Q9P2G9 620 aaPredicted RBP8.29□□□□□ -1.08
USP28-215ENST00000545608 ANAPC2Q9UJX6 822 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 INTUQ9ULD6 942 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 PSMD13Q9UNM6 376 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 ALG6Q9Y672 507 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 KCNMB2Q9Y691 235 aa8.29□□□□□ -1.08
USP28-215ENST00000545608 TENM4Q6N022 2769 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 hCG_1818297A0A087WSY0 165 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 IGHV5-51A0A0C4DH38 117 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 GLYATL1P3A0A0U1RQE8 302 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 GOLGA6L3A6NEY3 463 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 OR2AG2A6NM03 316 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 PSTPIP1O43586 416 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 KATNA1O75449 491 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 ZRANB2O95218 330 aaKnown RBP eCLIP8.28□□□□□ -1.081e-6■■■■■ 42
USP28-215ENST00000545608 AGTP01019 485 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 TPM1P09493 284 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 FOLR1P15328 257 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 NR1D1P20393 614 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 CASRP41180 1078 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 HALP42357 657 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 MAGEA1P43355 309 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 MARCKSL1P49006 195 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 MPP3Q13368 585 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 NFE2L1Q14494 772 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 KCNAB1Q14722 419 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 PPP2R5EQ16537 467 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 LDLRAP1Q5SW96 308 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 ZDHHC20Q5W0Z9 365 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 CERS6Q6ZMG9 384 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 GLT6D1Q7Z4J2 308 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 TMEM135Q86UB9 458 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 PPP1R3BQ86XI6 285 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 BEND7Q8N7W2 519 aaPredicted RBP8.28□□□□□ -1.08
USP28-215ENST00000545608 DDHD1Q8NEL9 900 aa8.28□□□□□ -1.08
USP28-215ENST00000545608 ZNF398Q8TD17 642 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms