RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 SEMA4DQ92854 862 aa5.58□□□□□ -1.52
YBX3-210ENST00000540975 LGALS12Q96DT0 336 aa5.58□□□□□ -1.52
YBX3-210ENST00000540975 DDOQ99489 341 aa5.58□□□□□ -1.52
YBX3-210ENST00000540975 LITAFQ99732 161 aa5.58□□□□□ -1.52
YBX3-210ENST00000540975 HGH1Q9BTY7 390 aa5.58□□□□□ -1.52
YBX3-210ENST00000540975 SMARCAD1Q9H4L7 1026 aa5.58□□□□□ -1.52
YBX3-210ENST00000540975 DNAJB4Q9UDY4 337 aa5.58□□□□□ -1.52
YBX3-210ENST00000540975 EXO1Q9UQ84 846 aaKnown RBP5.58□□□□□ -1.52
YBX3-210ENST00000540975 A0A1W2PR77 199 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 DUXAA6NLW8 204 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 NTN3O00634 580 aaPredicted RBP5.57□□□□□ -1.52
YBX3-210ENST00000540975 TSHBP01222 138 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 APOHP02749 345 aaPredicted RBP5.57□□□□□ -1.52
YBX3-210ENST00000540975 PATE4P0C8F1 98 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 ERVK-10P10266 1014 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 NMBRP28336 390 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 ATP12AP54707 1039 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 AIMP2Q13155 320 aaKnown RBP5.57□□□□□ -1.52
YBX3-210ENST00000540975 IRF3Q14653 427 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 DLG2Q15700 870 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 RBMS3Q6XE24 437 aaKnown RBP5.57□□□□□ -1.52
YBX3-210ENST00000540975 MCEMP1Q8IX19 187 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 PSD2Q9BQI7 771 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 RBM4Q9BWF3 364 aaKnown RBP5.57□□□□□ -1.52
YBX3-210ENST00000540975 DNAJC18Q9H819 358 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 PCDHGA5Q9Y5G8 931 aa5.57□□□□□ -1.52
YBX3-210ENST00000540975 AP3D1O14617 1153 aa5.56□□□□□ -1.52
YBX3-210ENST00000540975 NDUFS4O43181 175 aa5.56□□□□□ -1.52
YBX3-210ENST00000540975 SUOXP51687 545 aa5.56□□□□□ -1.52
YBX3-210ENST00000540975 KCNC3Q14003 757 aa5.56□□□□□ -1.52
YBX3-210ENST00000540975 ZNF876PQ49A33 203 aa5.56□□□□□ -1.52
YBX3-210ENST00000540975 GALNT5Q7Z7M9 940 aa5.56□□□□□ -1.52
YBX3-210ENST00000540975 WDSUB1Q8N9V3 476 aa5.56□□□□□ -1.52
YBX3-210ENST00000540975 TBC1D16Q8TBP0 767 aa5.56□□□□□ -1.52
YBX3-210ENST00000540975 LRRC59Q96AG4 307 aaKnown RBP5.56□□□□□ -1.52
YBX3-210ENST00000540975 CHCHD6Q9BRQ6 235 aa5.56□□□□□ -1.52
YBX3-210ENST00000540975 FLT1P17948 1338 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 VILLO15195 856 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 GPR137BO60478 399 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 DOK2O60496 412 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 ZBED4O75132 1171 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 RSL1D1O76021 490 aaKnown RBP5.55□□□□□ -1.52
YBX3-210ENST00000540975 LDLRP01130 860 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 PRSS56P0CW18 603 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 IGHV4-38-2P0DP08 117 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 CBLP22681 906 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 CHRNB4P30926 498 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 HOXC8P31273 242 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 ARHGAP11AQ6P4F7 1023 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 BARHL1Q9BZE3 327 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 SLA2Q9H6Q3 261 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 PELI2Q9HAT8 420 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 ADPRHL2Q9NX46 363 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 MIOSQ9NXC5 875 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 C2CD2Q9Y426 696 aa5.55□□□□□ -1.52
YBX3-210ENST00000540975 LAS1LQ9Y4W2 734 aaKnown RBP5.55□□□□□ -1.52
YBX3-210ENST00000540975 MITFO75030 526 aaPredicted RBP5.54□□□□□ -1.52
YBX3-210ENST00000540975 CD48P09326 243 aa5.54□□□□□ -1.52
YBX3-210ENST00000540975 GNAZP19086 355 aa5.54□□□□□ -1.52
YBX3-210ENST00000540975 DRG2P55039 364 aaKnown RBP5.54□□□□□ -1.52
YBX3-210ENST00000540975 PRKAA1Q13131 559 aa5.54□□□□□ -1.52
YBX3-210ENST00000540975 PPIGQ13427 754 aaKnown RBP eCLIP5.54□□□□□ -1.527e-10■□□□□ 8.5
YBX3-210ENST00000540975 FAM53AQ6NSI3 398 aaPredicted RBP5.54□□□□□ -1.52
YBX3-210ENST00000540975 KLC3Q6P597 504 aa5.54□□□□□ -1.52
YBX3-210ENST00000540975 C4orf50Q6ZRC1 276 aa5.54□□□□□ -1.52
YBX3-210ENST00000540975 DENND5BQ6ZUT9 1274 aa5.54□□□□□ -1.52
YBX3-210ENST00000540975 L3MBTL4Q8NA19 623 aa5.54□□□□□ -1.52
YBX3-210ENST00000540975 C1orf131Q8NDD1 294 aaKnown RBP5.54□□□□□ -1.52
YBX3-210ENST00000540975 TAS1R2Q8TE23 839 aa5.54□□□□□ -1.52
YBX3-210ENST00000540975 TMEM190Q8WZ59 177 aa5.54□□□□□ -1.52
YBX3-210ENST00000540975 SENP5Q96HI0 755 aaPredicted RBP5.54□□□□□ -1.52
YBX3-210ENST00000540975 SLC52A3Q9NQ40 469 aa5.54□□□□□ -1.52
YBX3-210ENST00000540975 A0A0G2JLW4 131 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 MMP9P14780 707 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 PRLRP16471 622 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 CKMT2P17540 419 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 PSMB10P40306 273 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 THOP1P52888 689 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 HILS1P60008 231 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 GNB1P62873 340 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 MFAP5Q13361 173 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 ALS2CLQ60I27 953 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 C15orf39Q6ZRI6 1047 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 FASTKD5Q7L8L6 764 aaKnown RBP5.53□□□□□ -1.52
YBX3-210ENST00000540975 APLFQ8IW19 511 aaPredicted RBP5.53□□□□□ -1.52
YBX3-210ENST00000540975 GPALPP1Q8IXQ4 340 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 CRYBG2Q8N1P7 616 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 PKNOX2Q96KN3 472 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 ZNF582Q96NG8 517 aaPredicted RBP5.53□□□□□ -1.52
YBX3-210ENST00000540975 FSD1Q9BTV5 496 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 PPIL3Q9H2H8 161 aaKnown RBP5.53□□□□□ -1.52
YBX3-210ENST00000540975 HRH4Q9H3N8 390 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 SYNCQ9H7C4 482 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 AMACRQ9UHK6 382 aa5.53□□□□□ -1.52
YBX3-210ENST00000540975 ASTN2O75129 1339 aaPredicted RBP5.52□□□□□ -1.53
YBX3-210ENST00000540975 LRRC72A6NJI9 287 aa5.52□□□□□ -1.53
YBX3-210ENST00000540975 SLC22A2O15244 555 aa5.52□□□□□ -1.53
YBX3-210ENST00000540975 EPHA2P29317 976 aa5.52□□□□□ -1.53
YBX3-210ENST00000540975 ALDH4A1P30038 563 aa5.52□□□□□ -1.53
YBX3-210ENST00000540975 MFAP4P55083 255 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms