RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 INTS7Q9NVH2 962 aaKnown RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 USP6P35125 1406 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 JUPP14923 745 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 ALDH3B2P48448 385 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 SLC18A1P54219 525 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 SREBF2Q12772 1141 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 ZNF674Q2M3X9 581 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 NOMO2Q5JPE7 1267 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 AGAP6Q5VW22 663 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 VWA5B2Q8N398 1253 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 NCSTNQ92542 709 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 TMEM143Q96AN5 459 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 CPB2Q96IY4 423 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 ZNF512Q96ME7 567 aaPredicted RBP8.67□□□□□ -1.02
YBX3-208ENST00000540447 AGAP4Q96P64 663 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 SPATA5L1Q9BVQ7 753 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 MTG2Q9H4K7 406 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 CEPT1Q9Y6K0 416 aa8.67□□□□□ -1.02
YBX3-208ENST00000540447 ADAMDEC1O15204 470 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 RAB3AP20336 220 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 PPIBP23284 216 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 RPS3AP61247 264 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 NAE1Q13564 534 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 SLC9B1Q4ZJI4 515 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 KLHL22Q53GT1 634 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 PIGGQ5H8A4 983 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 NKAPLQ5M9Q1 402 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 ESRP1Q6NXG1 681 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 ILDR2Q71H61 639 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 ASRGL1Q7L266 308 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 PSTKQ8IV42 348 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 TMEM203Q969S6 136 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 COL21A1Q96P44 957 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 CCDC106Q9BWC9 280 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 QRSL1Q9H0R6 528 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 ACSS2Q9NR19 701 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 A0A0A0MRY4 1105 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 hCG_2039718K7EN88 272 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 ENTPD6O75354 484 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 PSMB4P28070 264 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 LUMP51884 338 aaPredicted RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 RHBDL3P58872 404 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 TMEM62Q0P6H9 643 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 NCEH1Q6PIU2 408 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 GALNTL5Q7Z4T8 443 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 MARCH9Q86YJ5 346 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 OSCARQ8IYS5 282 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 OR52J3Q8NH60 311 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 AP2M1Q96CW1 435 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 SPATA13Q96N96 652 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 VPS25Q9BRG1 176 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 MUC3BQ9H195 1237 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 DDX4Q9NQI0 724 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 PNO1Q9NRX1 252 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 MGAT4CQ9UBM8 478 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 RPL36Q9Y3U8 105 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 CPN2P22792 545 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 S100GP29377 79 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 ELOAQ14241 798 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 ATXN7L3Q14CW9 347 aaPredicted RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 LRRC66Q68CR7 880 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 IRF2BP2Q7Z5L9 587 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 CPNE2Q96FN4 548 aaPredicted RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 CPXM1Q96SM3 734 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 LDHAL6BQ9BYZ2 381 aaPredicted RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 RETREG1Q9H6L5 497 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 ZDHHC18Q9NUE0 388 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 TMEM184CQ9NVA4 438 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 ZNRF3Q9ULT6 936 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 ATP7BP35670 1465 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 hCG_1818297A0A087WSY0 165 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 CIB4A0PJX0 185 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 SULT1C2O00338 296 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 CXCR6O00574 342 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 ARPC2O15144 300 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 GMFGO60234 142 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 MBL2P11226 248 aaPredicted RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 HLCSP50747 726 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 BCAT1P54687 386 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 EPS8L1Q8TE68 723 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 ZNF606Q8WXB4 792 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 USP7Q93009 1102 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 SH3YL1Q96HL8 342 aaPredicted RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 HPDLQ96IR7 371 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 TMEM209Q96SK2 561 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 C12orf57Q99622 126 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 DHRS9Q9BPW9 319 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 RBCK1Q9BYM8 510 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 RPF2Q9H7B2 306 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 MKS1Q9NXB0 559 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 ZNF490Q9ULM2 529 aaPredicted RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 DLGAP4Q9Y2H0 992 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 HCN4Q9Y3Q4 1203 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 FARP1Q9Y4F1 1045 aaPredicted RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 A6NL46 340 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 HSPA12AO43301 675 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 RNASEH2AO75792 299 aaKnown RBP8.66□□□□□ -1.02
YBX3-208ENST00000540447 FCER2P06734 321 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 KIAA1841Q6NSI8 718 aa8.66□□□□□ -1.02
YBX3-208ENST00000540447 ZDHHC24Q6UX98 284 aa8.66□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms