RNA–Protein interactions for RNA: ENST00000527827.1

CPSF1-202, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 619 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-202ENST00000527827 CHRNA4P43681 627 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 RPS15P62841 145 aaKnown RBP23.02■■□□□ 1.28
CPSF1-202ENST00000527827 TUBB4BP68371 445 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 HSD11B2P80365 405 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 WASHC5Q12768 1159 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 TUBB2AQ13885 445 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 SIRPB2Q5JXA9 342 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 GPRC6AQ5T6X5 926 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 ZNF517Q6ZMY9 492 aaPredicted RBP23.02■■□□□ 1.28
CPSF1-202ENST00000527827 SLC25A41Q8N5S1 370 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 EFCAB3Q8N7B9 438 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 SLC25A23Q9BV35 468 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 TUBB2BQ9BVA1 445 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 IMP3Q9NV31 184 aaKnown RBP23.02■■□□□ 1.28
CPSF1-202ENST00000527827 SAE1Q9UBE0 346 aaPredicted RBP23.02■■□□□ 1.28
CPSF1-202ENST00000527827 FARSAQ9Y285 508 aaKnown RBP23.02■■□□□ 1.28
CPSF1-202ENST00000527827 PCDHGA9Q9Y5G4 932 aaKnown RBP23.02■■□□□ 1.28
CPSF1-202ENST00000527827 CFAP20Q9Y6A4 193 aaKnown RBP23.02■■□□□ 1.28
CPSF1-202ENST00000527827 NOTCH2Q04721 2471 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 ESPL1Q14674 2120 aa23.02■■□□□ 1.28
CPSF1-202ENST00000527827 UBA6A0AVT1 1052 aaPredicted RBP23.01■■□□□ 1.27
CPSF1-202ENST00000527827 ARGFXA6NJG6 315 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 CPNE3O75131 537 aaKnown RBP23.01■■□□□ 1.27
CPSF1-202ENST00000527827 EPOP01588 193 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 NFKB1P19838 968 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 ARHGAP25P42331 645 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 ARL4DP49703 201 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 PGDP52209 483 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 GPS2Q13227 327 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 GPR19Q15760 415 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 LRRC38Q5VT99 294 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 ZDHHC20Q5W0Z9 365 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 METRNLQ641Q3 311 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 DUS1LQ6P1R4 473 aaKnown RBP23.01■■□□□ 1.27
CPSF1-202ENST00000527827 SLC38A9Q8NBW4 561 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 ZNF501Q96CX3 271 aaPredicted RBP23.01■■□□□ 1.27
CPSF1-202ENST00000527827 MRGPRX2Q96LB1 330 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 INSM2Q96T92 566 aaPredicted RBP23.01■■□□□ 1.27
CPSF1-202ENST00000527827 HRASLS2Q9NWW9 162 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP23.01■■□□□ 1.27
CPSF1-202ENST00000527827 IFNKQ9P0W0 207 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 UNC79Q9P2D8 2635 aa23.01■■□□□ 1.27
CPSF1-202ENST00000527827 GLYATL1P3A0A0U1RQE8 302 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 BUD23O43709 281 aaKnown RBP23■■□□□ 1.27
CPSF1-202ENST00000527827 SCRG1O75711 98 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 SORBS2O94875 1100 aaKnown RBP23■■□□□ 1.27
CPSF1-202ENST00000527827 AGFG2O95081 481 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 CCL11P51671 97 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 PPP2R5EQ16537 467 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 PAPD7Q5XG87 772 aaKnown RBP23■■□□□ 1.27
CPSF1-202ENST00000527827 MFSD7Q6UXD7 560 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 TMEM126BQ8IUX1 230 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 BEND7Q8N7W2 519 aaPredicted RBP23■■□□□ 1.27
CPSF1-202ENST00000527827 MR1Q95460 341 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 OXNAD1Q96HP4 312 aaPredicted RBP23■■□□□ 1.27
CPSF1-202ENST00000527827 WWP1Q9H0M0 922 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 ING2Q9H160 280 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 ACSS2Q9NR19 701 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 KCND1Q9NSA2 647 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 HACD3Q9P035 362 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 MAP4K5Q9Y4K4 846 aa23■■□□□ 1.27
CPSF1-202ENST00000527827 PECAM1P16284 738 aaPredicted RBP22.99■■□□□ 1.27
CPSF1-202ENST00000527827 LPOP22079 712 aaPredicted RBP22.99■■□□□ 1.27
CPSF1-202ENST00000527827 PBLDP30039 288 aaPredicted RBP22.99■■□□□ 1.27
CPSF1-202ENST00000527827 NR2C2P49116 596 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 PDE1BQ01064 536 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 XRCC4Q13426 336 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 ITGA9Q13797 1035 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 SLC1A5Q15758 541 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 FHL5Q5TD97 284 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 IZUMO3Q5VZ72 239 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 LCN10Q6JVE6 187 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 FBXO38Q6PIJ6 1188 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 GLT6D1Q7Z4J2 308 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 OOSP2Q86WS3 158 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 BLOC1S5Q8TDH9 187 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 ADAMTS17Q8TE56 1095 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 TFB1MQ8WVM0 346 aaKnown RBP22.99■■□□□ 1.27
CPSF1-202ENST00000527827 PPM1MQ96MI6 270 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 CHST8Q9H2A9 424 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 SMOXQ9NWM0 555 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 PLEKHB1Q9UF11 243 aaPredicted RBP22.99■■□□□ 1.27
CPSF1-202ENST00000527827 SLC24A2Q9UI40 661 aa22.99■■□□□ 1.27
CPSF1-202ENST00000527827 SSU72P8A0A1W2PR75 194 aa22.98■■□□□ 1.27
CPSF1-202ENST00000527827 F5H423 210 aaPredicted RBP22.98■■□□□ 1.27
CPSF1-202ENST00000527827 ZBTB11O95625 1053 aaPredicted RBP22.98■■□□□ 1.27
CPSF1-202ENST00000527827 CDKN2BP42772 138 aa22.98■■□□□ 1.27
CPSF1-202ENST00000527827 PTGIRP43119 386 aa22.98■■□□□ 1.27
CPSF1-202ENST00000527827 KPNA2P52292 529 aaKnown RBP22.98■■□□□ 1.27
CPSF1-202ENST00000527827 PTPRCAPQ14761 206 aa22.98■■□□□ 1.27
CPSF1-202ENST00000527827 TAZQ16635 292 aa22.98■■□□□ 1.27
CPSF1-202ENST00000527827 FNBP1LQ5T0N5 605 aa22.98■■□□□ 1.27
CPSF1-202ENST00000527827 PRAMEF17Q5VTA0 474 aa22.98■■□□□ 1.27
CPSF1-202ENST00000527827 RHOT1Q8IXI2 618 aa22.98■■□□□ 1.27
CPSF1-202ENST00000527827 SPDYE1Q8NFV5 336 aaPredicted RBP22.98■■□□□ 1.27
CPSF1-202ENST00000527827 OR8K5Q8NH50 307 aa22.98■■□□□ 1.27
CPSF1-202ENST00000527827 NAT14Q8WUY8 206 aa22.98■■□□□ 1.27
CPSF1-202ENST00000527827 ZFPM2Q8WW38 1151 aa22.98■■□□□ 1.27
CPSF1-202ENST00000527827 C12orf66Q96MD2 445 aa22.98■■□□□ 1.27
CPSF1-202ENST00000527827 FCRL5Q96RD9 977 aa22.98■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms