RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 C12orf66Q96MD2 445 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 ZNF778Q96MU6 729 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 TCF12Q99081 682 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 WWP1Q9H0M0 922 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 DPH5Q9H2P9 285 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 LRRN3Q9H3W5 708 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 UCK1Q9HA47 277 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 EPB41L5Q9HCM4 733 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 PPANQ9NQ55 473 aaKnown RBP5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 TREX1Q9NSU2 369 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 C20orf96Q9NUD7 363 aaPredicted RBP5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 IMP3Q9NV31 184 aaKnown RBP5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 INTS10Q9NVR2 710 aaKnown RBP5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 SLC23A2Q9UGH3 650 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 PSMD13Q9UNM6 376 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 PCDHB1Q9Y5F3 818 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 PCYT1BQ9Y5K3 369 aaPredicted RBP5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 AK5Q9Y6K8 562 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 COLEC10Q9Y6Z7 277 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 CEP250Q9BV73 2442 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 PI4KAP42356 2102 aa5.3□□□□□ -1.56
HMGB1P40-201ENST00000525121 USP34Q70CQ2 3546 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 CCDC187A0A096LP49 1063 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 A6NCN8 305 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 OR52A4PA6NMU1 304 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 FANCGO15287 622 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 MAP3K7O43318 606 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 RAD51CO43502 376 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 UBXN7O94888 489 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 ESR1P03372 595 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 JMJD7P0C870 316 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 PRSS56P0CW18 603 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 MTHFD1P11586 935 aaKnown RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 XRCC1P18887 633 aaPredicted RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 RBMS1P29558 406 aaKnown RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 MAGEA3P43357 314 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 RPL21P46778 160 aaKnown RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 CDKN1CP49918 316 aaPredicted RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 EIF3BP55884 814 aaKnown RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 OR1D5P58170 312 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 UBE2IP63279 158 aaKnown RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 B4GALNT1Q00973 533 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 DHX9Q08211 1270 aaKnown RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 PDIA2Q13087 525 aaKnown RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 EIF3IQ13347 325 aaKnown RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 TRA2AQ13595 282 aaKnown RBP eCLIP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 CRYMQ14894 314 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 NR1D2Q14995 579 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 RPE65Q16518 533 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 ISXQ2M1V0 245 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 TTLL9Q3SXZ7 439 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 DNTTIP2Q5QJE6 756 aaKnown RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 CHCHD2P9Q5T1J5 151 aaPredicted RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 CDCP2Q5VXM1 449 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 HIBCHQ6NVY1 386 aaPredicted RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 NEPROQ6NW34 567 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 CYB5D1Q6P9G0 228 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 TTC23LQ6PF05 361 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 CES3Q6UWW8 571 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 UNQ6494/PRO21346Q6UXR6 183 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 TMEM26Q6ZUK4 368 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 OTOAQ7RTW8 1153 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 ZNF572Q7Z3I7 529 aaPredicted RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 C11orf96Q7Z7L8 435 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 TMEM135Q86UB9 458 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 KCNMB4Q86W47 210 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 PLXDC1Q8IUK5 500 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 LSMEM2Q8N112 164 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 RAB42Q8N4Z0 105 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 CEP112Q8N8E3 955 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 GPR150Q8NGU9 434 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 SKA2Q8WVK7 121 aaPredicted RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 ZFPM2Q8WW38 1151 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 ASZ1Q8WWH4 475 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 NCSTNQ92542 709 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 FOPNLQ96NB1 174 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 CMKLR1Q99788 373 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 EBNA1BP2Q99848 306 aaKnown RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 ERP44Q9BS26 406 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 NRSN2Q9GZP1 204 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 CCDC86Q9H6F5 360 aaKnown RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 COG4Q9H9E3 785 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 WHRNQ9P202 907 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 MARCH4Q9P2E8 410 aaPredicted RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 TXNDC16Q9P2K2 825 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 ZC3H7BQ9UGR2 993 aaKnown RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 RABGEF1Q9UJ41 708 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 CHMP2BQ9UQN3 213 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 SNX24Q9Y343 169 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 ST14Q9Y5Y6 855 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 MRFAP1Q9Y605 127 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 COMMD10Q9Y6G5 202 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 FAM169AQ9Y6X4 670 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 LRRK1Q38SD2 2015 aa5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 TP53BP1Q12888 1972 aaPredicted RBP5.29□□□□□ -1.56
HMGB1P40-201ENST00000525121 IGHV1OR21-1A0A087WYE8 117 aa5.28□□□□□ -1.56
HMGB1P40-201ENST00000525121 FAM221BA6H8Z2 402 aa5.28□□□□□ -1.56
HMGB1P40-201ENST00000525121 PABPN1LA6NDY0 278 aaKnown RBP5.28□□□□□ -1.56
HMGB1P40-201ENST00000525121 TRABD2BA6NFA1 517 aa5.28□□□□□ -1.56
HMGB1P40-201ENST00000525121 GOLGA8KD6RF30 607 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 151.3 ms