RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 HAUS2Q9NVX0 235 aa10.67□□□□□ -0.7
DDX41-216ENST00000513562 RBM22Q9NW64 420 aaKnown RBP eCLIP10.67□□□□□ -0.7
DDX41-216ENST00000513562 SOHLH2Q9NX45 425 aa10.67□□□□□ -0.7
DDX41-216ENST00000513562 COPG2Q9UBF2 871 aa10.67□□□□□ -0.7
DDX41-216ENST00000513562 NOVA2Q9UNW9 492 aaKnown RBP10.67□□□□□ -0.7
DDX41-216ENST00000513562 PADI2Q9Y2J8 665 aa10.67□□□□□ -0.7
DDX41-216ENST00000513562 KLF2Q9Y5W3 355 aaPredicted RBP10.67□□□□□ -0.7
DDX41-216ENST00000513562 A0A1B0GUH1 482 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 TMCO5BA8MYB1 307 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 C9J4A7 227 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 MFSD11O43934 449 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 KCNJ13O60928 360 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 LCA5LO95447 670 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 IGHEP01854 428 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 HLA-DQB2P05538 268 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 MMP2P08253 660 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 MSL3P1P0C860 447 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 RARAP10276 462 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 KPNA2P52292 529 aaKnown RBP10.66□□□□□ -0.7
DDX41-216ENST00000513562 ART3Q13508 389 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 PTCHD3Q3KNS1 767 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 ZNF385CQ66K41 422 aaPredicted RBP10.66□□□□□ -0.7
DDX41-216ENST00000513562 TIGD7Q6NT04 549 aaPredicted RBP10.66□□□□□ -0.7
DDX41-216ENST00000513562 FBXO38Q6PIJ6 1188 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 TMC3Q7Z5M5 1100 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 TTC30BQ8N4P2 665 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 OR1L3Q8NH93 324 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 PPM1MQ96MI6 270 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 VPS35Q96QK1 796 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 WDR77Q9BQA1 342 aaPredicted RBP10.66□□□□□ -0.7
DDX41-216ENST00000513562 ADGRE3Q9BY15 652 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 SYTL2Q9HCH5 934 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 TMPRSS11EQ9UL52 423 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 CSAG2Q9Y5P2 127 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 POLEQ07864 2286 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 ITPR3Q14573 2671 aa10.66□□□□□ -0.7
DDX41-216ENST00000513562 DNHD1Q96M86 4753 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 MTHFD1P11586 935 aaKnown RBP10.65□□□□□ -0.7
DDX41-216ENST00000513562 BPIP17213 487 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 CYP2A7P20853 494 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 CCNCP24863 283 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 CD86P42081 329 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 TSFMP43897 325 aaKnown RBP10.65□□□□□ -0.7
DDX41-216ENST00000513562 ADCY2Q08462 1091 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 TMEM115Q12893 351 aaPredicted RBP10.65□□□□□ -0.7
DDX41-216ENST00000513562 GTF2H3Q13889 308 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 GALNT3Q14435 633 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 SSPNQ14714 243 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 CDKAL1Q5VV42 579 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 TXNRD3NBQ6F5E7 133 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 FAM83HQ6ZRV2 1179 aaPredicted RBP10.65□□□□□ -0.7
DDX41-216ENST00000513562 FJX1Q86VR8 437 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 AMZ2Q86W34 360 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 NEK11Q8NG66 645 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 GRHL3Q8TE85 626 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 PPP4R1Q8TF05 950 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 FAR1Q8WVX9 515 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 TEKT4Q8WW24 435 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 ZNF653Q96CK0 615 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 TSGA13Q96PP4 275 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 TRIB3Q96RU7 358 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 PSMD13Q9UNM6 376 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 SHOC2Q9UQ13 582 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 ZNF711Q9Y462 761 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 SCINQ9Y6U3 715 aa10.65□□□□□ -0.7
DDX41-216ENST00000513562 TACC2O95359 2948 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 A0A1W2PQJ5 194 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 OR6C74A6NCV1 312 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 TMEM150CB9EJG8 249 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 PEX12O00623 359 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 DDX3YO15523 660 aaKnown RBP10.64□□□□□ -0.71
DDX41-216ENST00000513562 SLC4A1P02730 911 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 TPM2P07951 284 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 CCDC172P0C7W6 258 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 PIRTP0C851 137 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 FERP16591 822 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 AGXTP21549 392 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 SLC25A11Q02978 314 aaKnown RBP10.64□□□□□ -0.71
DDX41-216ENST00000513562 PAFAH1B3Q15102 231 aaKnown RBP10.64□□□□□ -0.71
DDX41-216ENST00000513562 TESK1Q15569 626 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 IFI16Q16666 785 aaKnown RBP10.64□□□□□ -0.71
DDX41-216ENST00000513562 ATP13A5Q4VNC0 1218 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 CT47A1Q5JQC4 288 aaPredicted RBP10.64□□□□□ -0.71
DDX41-216ENST00000513562 NCBP2-AS2Q69YL0 99 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 ARMC6Q6NXE6 501 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 IRF2BP2Q7Z5L9 587 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 COG1Q8WTW3 980 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 ZFPM2Q8WW38 1151 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 RELTQ969Z4 430 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 TRAPPC9Q96Q05 1148 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 SLX1AQ9BQ83 275 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 C17orf62Q9BQA9 187 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 MAGEE1Q9HCI5 957 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 C1GALT1Q9NS00 363 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 IMP3Q9NV31 184 aaKnown RBP10.64□□□□□ -0.71
DDX41-216ENST00000513562 P4HTMQ9NXG6 502 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 POMT2Q9UKY4 750 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 CFAP20Q9Y6A4 193 aaKnown RBP10.64□□□□□ -0.71
DDX41-216ENST00000513562 DCHS2Q6V1P9 2916 aa10.64□□□□□ -0.71
DDX41-216ENST00000513562 SLC9B1P1A6NJY1 282 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms