RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 PARP8Q8N3A8 854 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 EFCAB3Q8N7B9 438 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 PNLDC1Q8NA58 520 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 KIAA0895Q8NCT3 520 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 DCAKDQ8WVC6 231 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 KCNN1Q92952 543 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 HSPBAP1Q96EW2 488 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 SSX3Q99909 188 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 MRPL9Q9BYD2 267 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 BTRCQ9Y297 605 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 SNX10Q9Y5X0 201 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 A0A1W2PQ67 120 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 CXCR6O00574 342 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 ZNF208O43345 1280 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 PABPC4LP0CB38 370 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 PDX1P52945 283 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 NCS1P62166 190 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 TXNL4AP83876 142 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 CES3Q6UWW8 571 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 SH3RF1Q7Z6J0 888 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 SLC9A9Q8IVB4 645 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 C7orf50Q9BRJ6 194 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 ASB8Q9H765 288 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 FAIMQ9NVQ4 179 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 HCN3Q9P1Z3 774 aa11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 C14orf166Q9Y224 244 aaKnown RBP11.11□□□□□ -0.63
LIMCH1-217ENST00000512946 A0A087X0B3 334 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 C12orf71A8MTZ7 269 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 HSBP1L1C9JCN9 74 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 TLX3O43711 291 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 ITM2AO43736 263 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 VNN2O95498 520 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 KCNA5P22460 613 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 DNASE1P24855 282 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 GNALP38405 381 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 SSX6Q7RTT6 188 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 WDR53Q7Z5U6 358 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 TBC1D17Q9HA65 648 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 RAB19A4D1S5 217 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 AGAP5A6NIR3 686 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 LRRN3E7EW58 273 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 PER2O15055 1255 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 TRUB2O95900 331 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 PTTG1O95997 202 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 APOC3P02656 99 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 DNAJB1P25685 340 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 CD79BP40259 229 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 CCR10P46092 362 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 ALDH7A1P49419 539 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 TOB1P50616 345 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 PCDH1Q08174 1060 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 PPP3CAQ08209 521 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 AKR1C8PQ5T2L2 129 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 C1orf186Q6ZWK4 172 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 GALNTL5Q7Z4T8 443 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM71AQ8IYT1 594 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 BEND7Q8N7W2 519 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 NKD2Q969F2 451 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 CELF6Q96J87 481 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 LRRN3Q9H3W5 708 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM83DQ9H4H8 585 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 LYARQ9NX58 379 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 TAS2R10Q9NYW0 307 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 ZNF282Q9UDV7 671 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 PHF24Q9UPV7 400 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 SPIN1Q9Y657 262 aaPredicted RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 NUP153P49790 1475 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 EIF1AYO14602 144 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 FPGTO14772 594 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 GADD45GO95257 159 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 ICAM1P05362 532 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 DBIP07108 87 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 GTF2F2P13984 249 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 HK1P19367 917 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 UBA1P22314 1058 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 CHMP24386 653 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 EIF1AXP47813 144 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 PPP4CP60510 307 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 INTS6LQ5JSJ4 861 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 TESCQ96BS2 214 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 TRIM36Q9NQ86 728 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 SLC17A7Q9P2U7 560 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 NOP16Q9Y3C1 178 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 A0A0G2JMP0 313 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 H0YAE9 185 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 IGFALSP35858 605 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 NDST1P52848 882 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 FOXO4P98177 505 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 PON2Q15165 354 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 SYVN1Q86TM6 617 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 FAM83AQ86UY5 434 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 ENDOVQ8N8Q3 282 aaKnown RBP11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 OR4M2Q8NGB6 313 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 HDAC10Q969S8 669 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 PPM1MQ96MI6 270 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 CPXM1Q96SM3 734 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 KCNN3Q9UGI6 736 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 PCDHB7Q9Y5E2 793 aa11.1□□□□□ -0.63
LIMCH1-217ENST00000512946 TOR1BO14657 336 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms