RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 CXCR2P25025 360 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 PSMB9P28065 219 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 TAF6P49848 677 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 SEPHS1P49903 392 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 ARSDP51689 593 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 IL5RAQ01344 420 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 DGCR6Q14129 220 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 MFSD4BQ5TF39 518 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 DESI1Q6ICB0 168 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 TXNDC11Q6PKC3 985 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 RNF19BQ6ZMZ0 732 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 TAS2R42Q7RTR8 314 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 GPRIN1Q7Z2K8 1008 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 CTU1Q7Z7A3 348 aaKnown RBP16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 GPC2Q8N158 579 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 OR6P1Q8NGX9 317 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 OR5K1Q8NHB7 308 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 SLC47A1Q96FL8 570 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 SLC39A8Q9C0K1 460 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 MMP27Q9H306 513 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 ACTR8Q9H981 624 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 TPRKBQ9Y3C4 175 aa16.88■□□□□ 0.29
SQSTM1-211ENST00000506690 AGAP5A6NIR3 686 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 USP17L7P0C7H9 530 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 PRDX3P30048 256 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 TGFBR1P36897 503 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 PNPLA4P41247 253 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 RFX4Q33E94 735 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 PLD3Q8IV08 490 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 FBXO16Q8IX29 292 aaPredicted RBP16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 RAVER1Q8IY67 606 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 EID3Q8N140 333 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 FIG4Q92562 907 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 KLRG1Q96E93 195 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 OR2B2Q9GZK3 357 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 KAT8Q9H7Z6 458 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 OPTCQ9UBM4 332 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 ZNF225Q9UK10 706 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 EIF3LQ9Y262 564 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 NYNRINQ9P2P1 1898 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 MROH6A6NGR9 719 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 CLDN24A6NM45 220 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 CCL22O00626 93 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 RAD51BO15315 384 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 SCO2O43819 266 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 RECQL4O94761 1208 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 RPS17P08708 135 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 UROSP10746 265 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 POLR2EP19388 210 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 PAX3P23760 479 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 FMO3P31513 532 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 TGFBR2P37173 567 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 CXCR4P61073 352 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 PPP1R8Q12972 351 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 C6orf136Q5SQH8 315 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 ANKS6Q68DC2 871 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 LAIR1Q6GTX8 287 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 SLC27A1Q6PCB7 646 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 BHLHA9Q7RTU4 235 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 EFL1Q7Z2Z2 1120 aaKnown RBP16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 SYVN1Q86TM6 617 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 OR8J3Q8NGG0 315 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 EDEM1Q92611 657 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 RHBDF1Q96CC6 855 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 ZHX1-C8orf76Q96EF9 292 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 C17orf80Q9BSJ5 609 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 MED10Q9BTT4 135 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 CEP44Q9C0F1 390 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 IL37Q9NZH6 218 aa16.87■□□□□ 0.29
SQSTM1-211ENST00000506690 OR51F1A6NGY5 319 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 GABRDO14764 452 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 HOXC11O43248 304 aaPredicted RBP16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 KERAO60938 352 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 TXNP10599 105 aaKnown RBP16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 FCGRTP55899 365 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 MVKQ03426 396 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 PWP1Q13610 501 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 PLEKHG6Q3KR16 790 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 ZNF404Q494X3 552 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 RAB41Q5JT25 222 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 CCDC81Q6ZN84 652 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 ADHFE1Q8IWW8 467 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 ATL1Q8WXF7 558 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 SPATC1LQ9H0A9 340 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 R3HDMLQ9H3Y0 253 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 POPDC3Q9HBV1 291 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 ACOT13Q9NPJ3 140 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 LIMD1Q9UGP4 676 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 ADGRE2Q9UHX3 823 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 PCDHB14Q9Y5E9 798 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 WDR90Q96KV7 1748 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 H0Y626 953 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 TRIM16O95361 564 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 FTH1P02794 183 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 MT-ND2P03891 347 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 CCNA1P78396 465 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 TRIP4Q15650 581 aaPredicted RBP16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 SV2CQ496J9 727 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 ATP6AP1LQ52LC2 224 aa16.86■□□□□ 0.29
SQSTM1-211ENST00000506690 COLEC12Q5KU26 742 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms