RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FOXO6A8MYZ6 492 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 DLX3O60479 287 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 WDR47O94967 919 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 ETV3P41162 512 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 DGKEP52429 567 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 HTR4Q13639 388 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 PTPRCAPQ14761 206 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 PRMT9Q6P2P2 845 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 RAD51AP1Q96B01 352 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 OLFM1Q99784 485 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 SLC29A3Q9BZD2 475 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 EFCAB1Q9HAE3 211 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 PRSS16Q9NQE7 514 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 HPS4Q9NQG7 708 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 LIMD1Q9UGP4 676 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 ZNHIT2Q9UHR6 403 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 ACSL5Q9ULC5 683 aa8.25□□□□□ -1.09
USP54-215ENST00000497106 G3BP2Q9UN86 482 aaKnown RBP8.25□□□□□ -1.09
USP54-215ENST00000497106 NLRC5Q86WI3 1866 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 PTPRDP23468 1912 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 FFAR2O15552 330 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 CTHP32929 405 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 IL12RB1P42701 662 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 TMEM115Q12893 351 aaPredicted RBP8.24□□□□□ -1.09
USP54-215ENST00000497106 CUL3Q13618 768 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 CYLC2Q14093 348 aaPredicted RBP8.24□□□□□ -1.09
USP54-215ENST00000497106 TSPAN33Q86UF1 283 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 PHACTR4Q8IZ21 702 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 STON2Q8WXE9 905 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 L3HYPDHQ96EM0 354 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 LRGUKQ96M69 825 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 OR2AG1Q9H205 316 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 RDH14Q9HBH5 336 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 SEMA4BQ9NPR2 832 aaPredicted RBP8.24□□□□□ -1.09
USP54-215ENST00000497106 IGSF5Q9NSI5 407 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 COLEC10Q9Y6Z7 277 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 DNAJC8O75937 253 aaPredicted RBP8.24□□□□□ -1.09
USP54-215ENST00000497106 FGF3P11487 239 aaPredicted RBP8.24□□□□□ -1.09
USP54-215ENST00000497106 SERPINB3P29508 390 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 MAGEA9P43362 315 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 MPP2Q14168 576 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 CCDC85BQ15834 202 aaPredicted RBP8.24□□□□□ -1.09
USP54-215ENST00000497106 LACTB2Q53H82 288 aaPredicted RBP8.24□□□□□ -1.09
USP54-215ENST00000497106 ARL13AQ5H913 290 aaPredicted RBP8.24□□□□□ -1.09
USP54-215ENST00000497106 EGFLAMQ63HQ2 1017 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 HORMAD1Q86X24 394 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 CACUL1Q86Y37 369 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 TMPRSS6Q8IU80 811 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 CEP97Q8IW35 865 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 SPATA6LQ8N4H0 392 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 DENND6BQ8NEG7 585 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 SNX19Q92543 992 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 QRFPRQ96P65 431 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 EFHD1Q9BUP0 239 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 PPM1HQ9ULR3 514 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 L3MBTL1Q9Y468 752 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 MTCH2Q9Y6C9 303 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 K7EPI3 171 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 UBXN8O00124 270 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 OPRD1P41143 372 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 CDKN2DP55273 166 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 IRF8Q02556 426 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 GTF2H2Q13888 395 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 FAM182AQ5T1J6 154 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 GTF2H2CQ6P1K8 395 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 FRMD7Q6ZUT3 714 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 MIER2Q8N344 545 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 GPR26Q8NDV2 337 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 SLC25A23Q9BV35 468 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 MYLK2Q9H1R3 596 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 VCXQ9H320 206 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 GPR34Q9UPC5 381 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 GPSM3Q9Y4H4 160 aa8.24□□□□□ -1.09
USP54-215ENST00000497106 ARHGAP10A1A4S6 786 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 H3BQ06 376 aaPredicted RBP8.23□□□□□ -1.09
USP54-215ENST00000497106 RNGTTO60942 597 aaKnown RBP8.23□□□□□ -1.09
USP54-215ENST00000497106 UBOX5O94941 541 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 PSMA3P25788 255 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ARNTP27540 789 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 SCTRP47872 440 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ACTN3Q08043 901 aaPredicted RBP8.23□□□□□ -1.09
USP54-215ENST00000497106 UBXN2BQ14CS0 331 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ATP13A5Q4VNC0 1218 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 LRRC73Q5JTD7 316 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 CRTC3Q6UUV7 619 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 TXNDC5Q8NBS9 432 aaKnown RBP8.23□□□□□ -1.09
USP54-215ENST00000497106 VPS37AQ8NEZ2 397 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ACTRT2Q8TDY3 377 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 FRS2Q8WU20 508 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 C10orf82Q8WW14 230 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ACOX2Q99424 681 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 HAUS8Q9BT25 410 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 NUF2Q9BZD4 464 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 RMND5AQ9H871 391 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 ABCF3Q9NUQ8 709 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 OR2AG2A6NM03 316 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 MEI4A8MW99 385 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 MID1O15344 667 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 SH3BP5O60239 455 aa8.23□□□□□ -1.09
USP54-215ENST00000497106 SNNO75324 88 aaPredicted RBP8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms