RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 KCTD19Q17RG1 926 aaPredicted RBP13□□□□□ -0.33
PTPRF-215ENST00000496447 LRP10Q7Z4F1 713 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 PRSS58Q8IYP2 241 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 SFRP1Q8N474 314 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 AMER2Q8N7J2 671 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 SIDT2Q8NBJ9 832 aaKnown RBP13□□□□□ -0.33
PTPRF-215ENST00000496447 SLC9A7Q96T83 725 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 POLR3BQ9NW08 1133 aaPredicted RBP13□□□□□ -0.33
PTPRF-215ENST00000496447 ALKBH4Q9NXW9 302 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 COPS7AQ9UBW8 275 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 SNAP91O60641 907 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 NOL4O94818 638 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 NSG1P42857 185 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 POLR2JP52435 117 aaKnown RBP13□□□□□ -0.33
PTPRF-215ENST00000496447 ACTR3P61158 418 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 NPLOC4Q8TAT6 608 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 NPAS2Q99743 824 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 CCDC59Q9P031 241 aaKnown RBP13□□□□□ -0.33
PTPRF-215ENST00000496447 SIRPGQ9P1W8 387 aa13□□□□□ -0.33
PTPRF-215ENST00000496447 C8GP07360 202 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 DDX6P26196 483 aaKnown RBP eCLIP12.99□□□□□ -0.335e-18■□□□□ 9.4
PTPRF-215ENST00000496447 PTGER3P43115 390 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 ADAM17P78536 824 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 ECT2LQ008S8 904 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 CYP4F3Q08477 520 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 CCNIQ14094 377 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 RFTN1Q14699 578 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-215ENST00000496447 AMZ1Q400G9 498 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 PLEKHG4Q58EX7 1191 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 GPR107Q5VW38 600 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 BEND5Q7L4P6 421 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 CTU1Q7Z7A3 348 aaKnown RBP12.99□□□□□ -0.33
PTPRF-215ENST00000496447 CPSF7Q8N684 471 aaKnown RBP12.99□□□□□ -0.33
PTPRF-215ENST00000496447 SHDQ96IW2 340 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 SUSD3Q96L08 255 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 ABCB10Q9NRK6 738 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 IL36AQ9UHA7 158 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 ADGRE2Q9UHX3 823 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 MRPS7Q9Y2R9 242 aaKnown RBP12.99□□□□□ -0.33
PTPRF-215ENST00000496447 PLLPQ9Y342 182 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 RBM7Q9Y580 266 aaKnown RBP12.99□□□□□ -0.33
PTPRF-215ENST00000496447 BTN3A3O00478 584 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 XKRYO14609 159 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 NRP2O60462 931 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 ESR1P03372 595 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 NMBRP28336 390 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 GCNT6Q5T4J0 391 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 SULT1C3Q6IMI6 304 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 ESRP1Q6NXG1 681 aaKnown RBP12.99□□□□□ -0.33
PTPRF-215ENST00000496447 ZNF730Q6ZMV8 503 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 CLEC4CQ8WTT0 213 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 KIFC1Q9BW19 673 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 SLCO1B3Q9NPD5 702 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 CRNNQ9UBG3 495 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-215ENST00000496447 MAP4K5Q9Y4K4 846 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 FAM86C2PA6NEL3 165 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 SAGP10523 405 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-215ENST00000496447 MYL9P24844 172 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 CLCQ05315 142 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 ACAP2Q15057 778 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 MZT2BQ6NZ67 158 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 KLHL24Q6TFL4 600 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 GK5Q6ZS86 529 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 GRPEL2Q8TAA5 225 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 WDR55Q9H6Y2 383 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-215ENST00000496447 ZNF221Q9UK13 617 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 CNOT6Q9ULM6 557 aaKnown RBP12.99□□□□□ -0.33
PTPRF-215ENST00000496447 TBX18O95935 607 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 PNLIPRP1P54315 467 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 CLEC20AQ6ZU45 233 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 PTCHD4Q6ZW05 846 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 OAFQ86UD1 273 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 HOPXQ9BPY8 73 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-215ENST00000496447 WDR26Q9H7D7 661 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 EHD3Q9NZN3 535 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 HCN3Q9P1Z3 774 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 ATRNL1Q5VV63 1379 aa12.99□□□□□ -0.33
PTPRF-215ENST00000496447 TGDSO95455 350 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 PTP4A2Q12974 167 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 ERICH5Q6P6B1 374 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 CXXC5Q7LFL8 322 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 AMZ2Q86W34 360 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 CELF5Q8N6W0 485 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 KCNS3Q9BQ31 491 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 REXO2Q9Y3B8 237 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 A0A0U1RQF3 1178 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 GSC2O15499 205 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 IRAK2O43187 625 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 ACTR1BP42025 376 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 CTSOP43234 321 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 LIMK2P53671 638 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 ACTR1AP61163 376 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 RPS24P62847 133 aaKnown RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 ZBTB6Q15916 424 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 FBXO48Q5FWF7 155 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 HGSNATQ68CP4 663 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 MBLAC2Q68D91 279 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 ENPP7Q6UWV6 458 aa12.98□□□□□ -0.33
PTPRF-215ENST00000496447 FBXO15Q8NCQ5 510 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-215ENST00000496447 PSMA8Q8TAA3 256 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms