RNA–Protein interactions for RNA: ENST00000495981.5

VPS52-222, Transcript of VPS52, GARP complex subunit, human

TSL 1 (best)

Gene VPS52, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-222	ENST00000495981	DNASE2B	Q8WZ79	361 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	TFAP2C	Q92754	450 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	GOLGA1	Q92805	767 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	DHX58	Q96C10	678 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	RNF125	Q96EQ8	232 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	ZNF419	Q96HQ0	510 aa	Predicted RBP	4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	MOGAT1	Q96PD6	335 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	DIRC2	Q96SL1	478 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	BBS2	Q9BXC9	721 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	SNX25	Q9H3E2	840 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	CUEDC2	Q9H467	287 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	APOBEC3G	Q9HC16	384 aa	Known RBP	4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	PLSCR4	Q9NRQ2	329 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	FAM49B	Q9NUQ9	324 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	DMAC2	Q9NW81	257 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	CTTNBP2NL	Q9P2B4	639 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	DEC1	Q9P2X7	70 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	DNAJB11	Q9UBS4	358 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	TBC1D29	Q9UFV1	150 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	SHOC2	Q9UQ13	582 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	SCML2	Q9UQR0	700 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	CDYL	Q9Y232	598 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	SLC27A6	Q9Y2P4	619 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	NFE2L3	Q9Y4A8	694 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	TTLL3	Q9Y4R7	772 aa		4.35	□□□□□ -1.71
VPS52-222	ENST00000495981	RP1L1	Q8IWN7	2480 aa	Predicted RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	NBEAL1	Q6ZS30	2694 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981		A0A1B0GVT2	93 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	SH3D21	A4FU49	640 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	TBC1D3B	A6NDS4	549 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	WASH3P	C4AMC7	463 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981		E9PAM4	449 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	CLIC2	O15247	247 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	PLOD3	O60568	738 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	SEMA7A	O75326	666 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	ZNF217	O75362	1048 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	TIPRL	O75663	272 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	URI1	O94763	535 aa	Predicted RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	CER1	O95813	267 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	ZNF883	P0CG24	379 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	TNNI1	P19237	187 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	ACO1	P21399	889 aa	Known RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	GLDC	P23378	1020 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	GCSH	P23434	173 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	HOXD9	P28356	352 aa	Predicted RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	SERPINA4	P29622	427 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	CD6	P30203	668 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	PIK3CA	P42336	1068 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	CHN2	P52757	468 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	NDST1	P52848	882 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	MAP3K7CL	P57077	242 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	SNRPF	P62306	86 aa	Known RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	IL9R	Q01113	521 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	MC2R	Q01718	297 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	SRSF6	Q13247	344 aa	Known RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	BYSL	Q13895	437 aa	Known RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	CCNG2	Q16589	344 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	BAK1	Q16611	211 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	KIF19	Q2TAC6	998 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	ZNF667	Q5HYK9	610 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	HES3	Q5TGS1	186 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	DRICH1	Q6PGQ1	229 aa	Predicted RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	KIAA1324	Q6UXG2	1013 aa	Known RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	ATG14	Q6ZNE5	492 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	GPATCH11	Q8N954	259 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	C12orf29	Q8N999	325 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981		Q8NA96	180 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	OR52N2	Q8NGI0	321 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	ZFP28	Q8NHY6	868 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	MBD3L2	Q8NHZ7	208 aa	Predicted RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	GRAMD1A	Q96CP6	724 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	KTI12	Q96EK9	354 aa	Predicted RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	MARS2	Q96GW9	593 aa	Known RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	PIWIL1	Q96J94	861 aa	Known RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	PRICKLE1	Q96MT3	831 aa	Predicted RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	TRIB1	Q96RU8	372 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	NUDT16L1	Q9BRJ7	211 aa	Known RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	NUDT22	Q9BRQ3	303 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	BLZF1	Q9H2G9	400 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	EPB41L4B	Q9H329	900 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	MAGEF1	Q9HAY2	307 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	BARX1	Q9HBU1	254 aa	Predicted RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	COMMD8	Q9NX08	183 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	NSMCE4A	Q9NXX6	385 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	NKIRAS2	Q9NYR9	191 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	NDUFAF4	Q9P032	175 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	THAP10	Q9P2Z0	257 aa	Predicted RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	PLEKHB1	Q9UF11	243 aa	Predicted RBP	4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	CLEC4E	Q9ULY5	219 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	RCE1	Q9Y256	329 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	SH3BP1	Q9Y3L3	701 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	STON1	Q9Y6Q2	735 aa		4.34	□□□□□ -1.71
VPS52-222	ENST00000495981	NIPBL	Q6KC79	2804 aa	eCLIP	4.34	□□□□□ -1.72
VPS52-222	ENST00000495981	ANKHD1	Q8IWZ3	2542 aa	Known RBP	4.33	□□□□□ -1.72
VPS52-222	ENST00000495981	CHD5	Q8TDI0	1954 aa		4.33	□□□□□ -1.72
VPS52-222	ENST00000495981		A0A1B0GTW7	788 aa		4.33	□□□□□ -1.72
VPS52-222	ENST00000495981	GXYLT2	A0PJZ3	443 aa		4.33	□□□□□ -1.72
VPS52-222	ENST00000495981	MEI4	A8MW99	385 aa		4.33	□□□□□ -1.72
VPS52-222	ENST00000495981		K7ENP7	123 aa		4.33	□□□□□ -1.72

Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms