RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 ADGRE2Q9UHX3 823 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 PTBP2Q9UKA9 531 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 LOC110117498-PIK3R3F6TDL0 507 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 UBXN8O00124 270 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 LAG3P18627 525 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 GCAP28676 217 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 CCR10P46092 362 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 NRG1Q02297 640 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 CHSY3Q70JA7 882 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 IFNLR1Q8IU57 520 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 GAB3Q8WWW8 586 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 YIPF2Q9BWQ6 316 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 THG1LQ9NWX6 298 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 RAPGEFL1Q9UHV5 662 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 ARVCFO00192 962 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 CNTN5O94779 1100 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 GATMP50440 423 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 C1DQ13901 141 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 INO80DQ53TQ3 878 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 KIAA0930Q6ICG6 404 aaPredicted RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 KRT73Q86Y46 540 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 TMEM126BQ8IUX1 230 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 ZC3H7AQ8IWR0 971 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 TP53INP2Q8IXH6 220 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 NENFQ9UMX5 172 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 KIAA0100Q14667 2235 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 WBP4O75554 376 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 ACRP10323 421 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 CCT3P49368 545 aaKnown RBP16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 RELAQ04206 551 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 RFX4Q33E94 735 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 ROPN1LQ96C74 230 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 MOCOSQ96EN8 888 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 ZDHHC7Q9NXF8 308 aa16.12■□□□□ 0.17
CCDC88B-209ENST00000494080 PTGESO14684 152 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 OTCP00480 354 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 ZNF865P0CJ78 1059 aaPredicted RBP16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 NCF4Q15080 339 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 TSNQ15631 228 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 DGKKQ5KSL6 1271 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 BRSK1Q8TDC3 778 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 KBTBD7Q8WVZ9 684 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 OCEL1Q9H607 264 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 PMF1-BGLAPU3KQ54 211 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 SLC9A3R1O14745 358 aaPredicted RBP16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 SLC7A4O43246 635 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 PRAMEF1O95521 474 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 DHRS4L1P0CG22 281 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 GMPRP36959 345 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 HCAR3P49019 387 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 SGCGQ13326 291 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 TYW3Q6IPR3 259 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 SERINC5Q86VE9 423 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 CPNE9Q8IYJ1 553 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 DMRTB1Q96MA1 342 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 SMAD5Q99717 465 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 CCDC162PA2VCL2 907 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 CCDC182A6NF36 153 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 AQP12BA6NM10 295 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 CAPN14A8MX76 684 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 LRATO95237 230 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 AHSGP02765 367 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 CTC1Q2NKJ3 1217 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 RAET1GQ6H3X3 334 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 AQP12AQ8IXF9 295 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 PLD6Q8N2A8 252 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 TWIST2Q8WVJ9 160 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 BIRC8Q96P09 236 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 TRPC4Q9UBN4 977 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 KLHL20Q9Y2M5 609 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 FUOMA2VDF0 154 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 BCKDKO14874 412 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 ALDOAP04075 364 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 CNPP09543 421 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 GRK3P35626 688 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 GALNT2Q10471 571 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 CNTN1Q12860 1018 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 ZNF57Q68EA5 555 aaPredicted RBP16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 ERMP1Q7Z2K6 904 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 AADATQ8N5Z0 425 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 PACRGLQ8N7B6 248 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 REXO5Q96IC2 774 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 MOV10Q9HCE1 1003 aaKnown RBP16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 CCNB1IP1Q9NPC3 277 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 MTRRQ9UBK8 725 aa16.11■□□□□ 0.17
CCDC88B-209ENST00000494080 IQCF5A8MTL0 148 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 COX7A2P14406 83 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 CYP4F8P98187 520 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 RAB39AQ14964 217 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 UPP1Q16831 310 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 TIFABQ6ZNK6 161 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 CLHC1Q8NHS4 586 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 SMOC2Q9H3U7 446 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 KRT84Q9NSB2 600 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 SAMHD1Q9Y3Z3 626 aaKnown RBP16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 GLYATL1P3A0A0U1RQE8 302 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 NOBOXO60393 691 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 TMCC2O75069 709 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 FAM163BP0C2L3 166 aa16.1■□□□□ 0.17
CCDC88B-209ENST00000494080 UMPSP11172 480 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms