RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 OGFRL1Q5TC84 451 aaPredicted RBP20.77■□□□□ 0.92
CCDC88B-208ENST00000492980 BLOC1S3Q6QNY0 202 aa20.77■□□□□ 0.92
CCDC88B-208ENST00000492980 SLC45A3Q96JT2 553 aa20.77■□□□□ 0.92
CCDC88B-208ENST00000492980 COPS8Q99627 209 aa20.77■□□□□ 0.92
CCDC88B-208ENST00000492980 APOL5Q9BWW9 433 aa20.77■□□□□ 0.92
CCDC88B-208ENST00000492980 PCDHAC1Q9H158 963 aa20.77■□□□□ 0.92
CCDC88B-208ENST00000492980 RIC8BQ9NVN3 520 aa20.77■□□□□ 0.92
CCDC88B-208ENST00000492980 A0A1W2PQ67 120 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 ANGPT2O15123 496 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 CAPN1P07384 714 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 SPINT3P49223 89 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 SLC7A2P52569 658 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 GRIK2Q13002 908 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 CAMK1Q14012 370 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 CRY1Q16526 586 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 TTLL9Q3SXZ7 439 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 SPATA24Q86W54 205 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 OR4F6Q8NGB9 312 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 TMEM79Q9BSE2 394 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 BRINP2Q9C0B6 783 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 ABCG8Q9H221 673 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 MARK1Q9P0L2 795 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 ERVW-1Q9UQF0 538 aa20.77■□□□□ 0.91
CCDC88B-208ENST00000492980 IGLV3-16A0A075B6K0 115 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 PRSS51A0A1B0GVH4 220 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 PEX1O43933 1283 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 XYLBO75191 536 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 HNRNPA1P09651 372 aaKnown RBP eCLIP20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 VCLP18206 1134 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 HTR6P50406 440 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 ERVK-8P63133 956 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 MRPS35P82673 323 aaKnown RBP20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 TRAP1Q12931 704 aaKnown RBP20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 TRAF3Q13114 568 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 ZDHHC20Q5W0Z9 365 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 PSRC1Q6PGN9 363 aaPredicted RBP20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 Q6ZSR9 355 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 GRASPQ7Z6J2 395 aaPredicted RBP20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 PLPP6Q8IY26 295 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 NAT16Q8N8M0 369 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 METTL6Q8TCB7 284 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 LRCH3Q96II8 777 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 KCTD5Q9NXV2 234 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 EPS15L1Q9UBC2 864 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 PRKAG2Q9UGJ0 569 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 RIMS3Q9UJD0 308 aa20.76■□□□□ 0.91
CCDC88B-208ENST00000492980 LINC01553A4QN01 128 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 TCF3P15923 654 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 ARL1P40616 181 aaPredicted RBP20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 ZFP36L2P47974 494 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 UBE3AQ05086 875 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 ADGRE1Q14246 886 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 COQ5Q5HYK3 327 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 C6orf136Q5SQH8 315 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 AHI1Q8N157 1196 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 PLCD3Q8N3E9 789 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 FRS2Q8WU20 508 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 ULK4Q96C45 1275 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 MRGPRX3Q96LB0 322 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 TEX37Q96LM6 180 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 EGFL8Q99944 293 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 C1orf50Q9BV19 199 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 IPPKQ9H8X2 491 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 KLHL42Q9P2K6 505 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 TMPRSS11EQ9UL52 423 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 ALPK3Q96L96 1907 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 FXYD1O00168 92 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 OTCP00480 354 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 C8BP07358 591 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 CEBPBP17676 345 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 POLR2EP19388 210 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 RECQLP46063 649 aaPredicted RBP20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 AQP4P55087 323 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 POLR2LP62875 67 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 PDCD4Q53EL6 469 aaKnown RBP20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 C6orf10Q5SRN2 563 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 ZNF697Q5TEC3 545 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 SULT1C3Q6IMI6 304 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 TSPEARQ8WU66 669 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 CYB5D2Q8WUJ1 264 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 UBTD2Q8WUN7 234 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 SORCS1Q8WY21 1168 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 ING5Q8WYH8 240 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 RHBDF1Q96CC6 855 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 OTUB2Q96DC9 234 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 HOPXQ9BPY8 73 aaPredicted RBP20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 EBF3Q9H4W6 596 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 RDH14Q9HBH5 336 aa20.75■□□□□ 0.91
CCDC88B-208ENST00000492980 SMNDC1O75940 238 aaKnown RBP eCLIP20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 CBSLP0DN79 551 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 CBSP35520 551 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 RCAN2Q14206 197 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 BRAT1Q6PJG6 821 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 IL27RAQ6UWB1 636 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 LILRA2Q8N149 483 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 SFRP1Q8N474 314 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 MINDY1Q8N5J2 469 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 HERVK_113Q902F9 699 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 PPP2R3CQ969Q6 453 aa20.74■□□□□ 0.91
CCDC88B-208ENST00000492980 ATP6V1E2Q96A05 226 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms