RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 OR2L2Q8NH16 312 aa17.76■□□□□ 0.43
COL9A3-214ENST00000490398 RSC1A1Q92681 617 aa17.76■□□□□ 0.43
COL9A3-214ENST00000490398 HDAC10Q969S8 669 aa17.76■□□□□ 0.43
COL9A3-214ENST00000490398 DCUN1D1Q96GG9 259 aa17.76■□□□□ 0.43
COL9A3-214ENST00000490398 PBKQ96KB5 322 aa17.76■□□□□ 0.43
COL9A3-214ENST00000490398 LINC00615Q96LM1 132 aaPredicted RBP17.76■□□□□ 0.43
COL9A3-214ENST00000490398 CMKLR1Q99788 373 aa17.76■□□□□ 0.43
COL9A3-214ENST00000490398 ZMYND15Q9H091 742 aa17.76■□□□□ 0.43
COL9A3-214ENST00000490398 STN1Q9H668 368 aaKnown RBP17.76■□□□□ 0.43
COL9A3-214ENST00000490398 TTC7AQ9ULT0 858 aaPredicted RBP17.76■□□□□ 0.43
COL9A3-214ENST00000490398 ZW10O43264 779 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 ZSCAN12O43309 604 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 KCNJ13O60928 360 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 POLBP06746 335 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 ADRA1DP25100 572 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 PRLHRP49683 370 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 SESN2P58004 480 aaPredicted RBP17.75■□□□□ 0.43
COL9A3-214ENST00000490398 BASP1P80723 227 aaKnown RBP17.75■□□□□ 0.43
COL9A3-214ENST00000490398 CACNG1Q06432 222 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 SRSF6Q13247 344 aaKnown RBP17.75■□□□□ 0.43
COL9A3-214ENST00000490398 CLN3Q13286 438 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 SEMA3AQ14563 771 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 LRRC69Q6ZNQ3 347 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 PDZD3Q86UT5 571 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 CFAP206Q8IYR0 622 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 KCNE4Q8WWG9 221 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 CXorf40BQ96DE9 158 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 ZNF514Q96K75 400 aaPredicted RBP17.75■□□□□ 0.43
COL9A3-214ENST00000490398 RMDN2Q96LZ7 410 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 RANBP9Q96S59 729 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 OSBPL9Q96SU4 736 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 NRTNQ99748 197 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 LDHAL6BQ9BYZ2 381 aaPredicted RBP17.75■□□□□ 0.43
COL9A3-214ENST00000490398 UCK1Q9HA47 277 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 CHRAC1Q9NRG0 131 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 POT1Q9NUX5 634 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 TCAF1Q9Y4C2 921 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 PCDHGA7Q9Y5G6 932 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 IGSF10Q6WRI0 2623 aa17.75■□□□□ 0.43
COL9A3-214ENST00000490398 HEATR9A2RTY3 570 aa17.74■□□□□ 0.43
COL9A3-214ENST00000490398 HGSO14964 777 aaPredicted RBP17.74■□□□□ 0.43
COL9A3-214ENST00000490398 KLK10O43240 276 aa17.74■□□□□ 0.43
COL9A3-214ENST00000490398 UBXN7O94888 489 aa17.74■□□□□ 0.43
COL9A3-214ENST00000490398 GOT2P00505 430 aaKnown RBP17.74■□□□□ 0.43
COL9A3-214ENST00000490398 LEPRP48357 1165 aaKnown RBP17.74■□□□□ 0.43
COL9A3-214ENST00000490398 PPP1CAP62136 330 aa17.74■□□□□ 0.43
COL9A3-214ENST00000490398 ACVR1Q04771 509 aa17.74■□□□□ 0.43
COL9A3-214ENST00000490398 TRA2AQ13595 282 aaKnown RBP eCLIP17.74■□□□□ 0.43
COL9A3-214ENST00000490398 SKIDA1Q1XH10 827 aa17.74■□□□□ 0.43
COL9A3-214ENST00000490398 ANKRD22Q5VYY1 191 aa17.74■□□□□ 0.43
COL9A3-214ENST00000490398 WDR74Q6RFH5 385 aaPredicted RBP17.74■□□□□ 0.43
COL9A3-214ENST00000490398 ARHGAP22Q7Z5H3 698 aa17.74■□□□□ 0.43
COL9A3-214ENST00000490398 ZFAND4Q86XD8 727 aa17.74■□□□□ 0.43
COL9A3-214ENST00000490398 MAGOHBQ96A72 148 aaKnown RBP17.74■□□□□ 0.43
COL9A3-214ENST00000490398 PRORYQ9H606 182 aa17.74■□□□□ 0.43
COL9A3-214ENST00000490398 EIF2B3Q9NR50 452 aaKnown RBP17.74■□□□□ 0.43
COL9A3-214ENST00000490398 IMP3Q9NV31 184 aaKnown RBP17.74■□□□□ 0.43
COL9A3-214ENST00000490398 EFCAB7A8K855 629 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 KIF1CO43896 1103 aaKnown RBP17.73■□□□□ 0.43
COL9A3-214ENST00000490398 OR1I1O60431 355 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 MTHFD1P11586 935 aaKnown RBP17.73■□□□□ 0.43
COL9A3-214ENST00000490398 PDHA2P29803 388 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 COILP38432 576 aaPredicted RBP17.73■□□□□ 0.43
COL9A3-214ENST00000490398 HALP42357 657 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 MLLT3P42568 568 aaPredicted RBP17.73■□□□□ 0.43
COL9A3-214ENST00000490398 CAPRIN2Q6IMN6 1127 aaKnown RBP17.73■□□□□ 0.43
COL9A3-214ENST00000490398 CES3Q6UWW8 571 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 NAPRTQ6XQN6 538 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 LDB1Q86U70 411 aaPredicted RBP17.73■□□□□ 0.43
COL9A3-214ENST00000490398 BMPERQ8N8U9 685 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 TMEM159Q96B96 161 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 RNF31Q96EP0 1072 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 TGM7Q96PF1 710 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 CPNE5Q9HCH3 593 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 MARCH4Q9P2E8 410 aaPredicted RBP17.73■□□□□ 0.43
COL9A3-214ENST00000490398 SNX12Q9UMY4 172 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 NEU2Q9Y3R4 380 aa17.73■□□□□ 0.43
COL9A3-214ENST00000490398 MN1Q10571 1320 aaPredicted RBP17.72■□□□□ 0.43
COL9A3-214ENST00000490398 CFAP99D6REC4 459 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 NVLO15381 856 aaKnown RBP17.72■□□□□ 0.43
COL9A3-214ENST00000490398 CAPN5O15484 640 aaPredicted RBP17.72■□□□□ 0.43
COL9A3-214ENST00000490398 KIF5CO60282 957 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 AVILO75366 819 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 KRT14P02533 472 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 RALBP11234 206 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 MGAT1P26572 445 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 NMBRP28336 390 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 CSTF2P33240 577 aaKnown RBP eCLIP17.72■□□□□ 0.43
COL9A3-214ENST00000490398 PREPP48147 710 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 GPS1Q13098 491 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 KCNJ11Q14654 390 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 CYP1B1Q16678 543 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 AVL9Q8NBF6 648 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 AGBL5Q8NDL9 886 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 HM13Q8TCT9 377 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 ART4Q93070 314 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 C12orf66Q96MD2 445 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 DPYSL5Q9BPU6 564 aa17.72■□□□□ 0.43
COL9A3-214ENST00000490398 TRIM56Q9BRZ2 755 aaKnown RBP17.72■□□□□ 0.43
COL9A3-214ENST00000490398 CCM2Q9BSQ5 444 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms