RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 SOX13Q9UN79 622 aa17.65■□□□□ 0.42
HDAC6-225ENST00000483506 SATB2Q9UPW6 733 aa17.65■□□□□ 0.42
HDAC6-225ENST00000483506 AK5Q9Y6K8 562 aa17.65■□□□□ 0.42
HDAC6-225ENST00000483506 PKD1L2Q7Z442 2459 aa17.65■□□□□ 0.42
HDAC6-225ENST00000483506 CELSR3Q9NYQ7 3312 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 LAMA5O15230 3695 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 OR52A4PA6NMU1 304 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 QSOX1O00391 747 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 DUX1O43812 170 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 VIPP01282 170 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 MPOP05164 745 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 PTGIRP43119 386 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 PRAMEP78395 509 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 RNASEH2BQ5TBB1 312 aaKnown RBP17.64■□□□□ 0.41
HDAC6-225ENST00000483506 NKAIN2Q5VXU1 208 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 WDR74Q6RFH5 385 aaPredicted RBP17.64■□□□□ 0.41
HDAC6-225ENST00000483506 ZNF761Q86XN6 746 aaPredicted RBP17.64■□□□□ 0.41
HDAC6-225ENST00000483506 SERPINB12Q96P63 405 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 CCM2Q9BSQ5 444 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 SEMA6CQ9H3T2 930 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 VPS37BQ9H9H4 285 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 RDH14Q9HBH5 336 aa17.64■□□□□ 0.41
HDAC6-225ENST00000483506 CACNA1BQ00975 2339 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 IGHV5-10-1A0A0J9YXX1 117 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 CCDC188H7C350 402 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 AVILO75366 819 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 THRAP10827 490 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 ARNTP27540 789 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 NMBRP28336 390 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 PBLDP30039 288 aaPredicted RBP17.63■□□□□ 0.41
HDAC6-225ENST00000483506 LIMK2P53671 638 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 ERVPABLB-1P60509 514 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 ETF1P62495 437 aaKnown RBP17.63■□□□□ 0.41
HDAC6-225ENST00000483506 TRA2AQ13595 282 aaKnown RBP eCLIP17.63■□□□□ 0.41
HDAC6-225ENST00000483506 PPP1R7Q15435 360 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 RPE65Q16518 533 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 TBC1D25Q3MII6 688 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 FASTKD1Q53R41 847 aaKnown RBP17.63■□□□□ 0.41
HDAC6-225ENST00000483506 C3orf38Q5JPI3 329 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 AARS2Q5JTZ9 985 aaKnown RBP17.63■□□□□ 0.41
HDAC6-225ENST00000483506 SYDE1Q6ZW31 735 aaPredicted RBP17.63■□□□□ 0.41
HDAC6-225ENST00000483506 USP53Q70EK8 1073 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 TRIM48Q8IWZ4 208 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 PPIL6Q8IXY8 311 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 C17orf53Q8N3J3 647 aaPredicted RBP17.63■□□□□ 0.41
HDAC6-225ENST00000483506 MPP5Q8N3R9 675 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 CLDN19Q8N6F1 224 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 OR6P1Q8NGX9 317 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 SNIP1Q8TAD8 396 aaKnown RBP17.63■□□□□ 0.41
HDAC6-225ENST00000483506 ZNF578Q96N58 590 aaPredicted RBP17.63■□□□□ 0.41
HDAC6-225ENST00000483506 TTC1Q99614 292 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 EPB41L5Q9HCM4 733 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 ASCL3Q9NQ33 180 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 PRSS21Q9Y6M0 314 aa17.63■□□□□ 0.41
HDAC6-225ENST00000483506 PLD2O14939 933 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 HGSO14964 777 aaPredicted RBP17.62■□□□□ 0.41
HDAC6-225ENST00000483506 MTHFD1P11586 935 aaKnown RBP17.62■□□□□ 0.41
HDAC6-225ENST00000483506 HOXB3P14651 431 aaPredicted RBP17.62■□□□□ 0.41
HDAC6-225ENST00000483506 IVDP26440 423 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 PPARGP37231 505 aaPredicted RBP17.62■□□□□ 0.41
HDAC6-225ENST00000483506 RPA4Q13156 261 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 SEMA3AQ14563 771 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 KIAA0930Q6ICG6 404 aaPredicted RBP17.62■□□□□ 0.41
HDAC6-225ENST00000483506 CAPRIN2Q6IMN6 1127 aaKnown RBP17.62■□□□□ 0.41
HDAC6-225ENST00000483506 TMEM71Q6P5X7 295 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 RAB11FIP2Q7L804 512 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 CXorf40BQ96DE9 158 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 MFSD3Q96ES6 412 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 AHCYL2Q96HN2 611 aaKnown RBP17.62■□□□□ 0.41
HDAC6-225ENST00000483506 RMDN2Q96LZ7 410 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 SLC46A1Q96NT5 459 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 TBC1D10AQ9BXI6 508 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 COG4Q9H9E3 785 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 CATSPERZQ9NTU4 200 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 OGFRQ9NZT2 677 aa17.62■□□□□ 0.41
HDAC6-225ENST00000483506 URB1O60287 2271 aaKnown RBP17.61■□□□□ 0.41
HDAC6-225ENST00000483506 ZFHX4Q86UP3 3567 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 FAM237BA0A1B0GVD1 139 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 MAGEB16A2A368 324 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 PMS2P1A4D2B8 440 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 SDR42E2A6NKP2 422 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 SRRM3A6NNA2 597 aaPredicted RBP17.61■□□□□ 0.41
HDAC6-225ENST00000483506 CDRT15L2A8MXV6 281 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 DNALI1O14645 258 aaPredicted RBP17.61■□□□□ 0.41
HDAC6-225ENST00000483506 ITGA2BP08514 1039 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 SLC35G4P0C7Q5 338 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 PAFAH1B1P43034 410 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 ARCN1P48444 511 aaKnown RBP17.61■□□□□ 0.41
HDAC6-225ENST00000483506 TERF1P54274 439 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 GPR18Q14330 331 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 CLEC14AQ86T13 490 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 HOOK3Q86VS8 718 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 CFAP206Q8IYR0 622 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 LILRA3Q8N6C8 439 aaPredicted RBP17.61■□□□□ 0.41
HDAC6-225ENST00000483506 GPR150Q8NGU9 434 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 ZFPM2Q8WW38 1151 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 CCDC74BQ96LY2 380 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 INSM2Q96T92 566 aaPredicted RBP17.61■□□□□ 0.41
HDAC6-225ENST00000483506 WWP1Q9H0M0 922 aa17.61■□□□□ 0.41
HDAC6-225ENST00000483506 OR52A5Q9H2C5 316 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms