RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 ELF4Q99607 663 aaPredicted RBP12.03□□□□□ -0.48
SDC1-206ENST00000482879 GPR21Q99679 349 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 OLFM1Q99784 485 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 TIMM29Q9BSF4 260 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 ZDHHC5Q9C0B5 715 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 CAB39LQ9H9S4 337 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 KLC4Q9NSK0 619 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 SPATS2LQ9NUQ6 558 aaKnown RBP12.03□□□□□ -0.48
SDC1-206ENST00000482879 TRNAU1APQ9NX07 287 aaKnown RBP12.03□□□□□ -0.48
SDC1-206ENST00000482879 TAS2R13Q9NYV9 303 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 GALPQ9UBC7 116 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 CTNNAL1Q9UBT7 734 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 DNAJC16Q9Y2G8 782 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 MED16Q9Y2X0 877 aa12.03□□□□□ -0.48
SDC1-206ENST00000482879 C17orf113A0A1B0GUU1 675 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 HMX2A2RU54 273 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 KLHL33A6NCF5 533 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 TRIM49D1C9J1S8 452 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 KPNA5O15131 536 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 DFNA5O60443 496 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 APOA4P06727 396 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 CD9P21926 228 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 FDXRP22570 491 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 AK4P27144 223 aaPredicted RBP12.02□□□□□ -0.49
SDC1-206ENST00000482879 AOAHP28039 575 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 SKIV2L2P42285 1042 aaKnown RBP12.02□□□□□ -0.49
SDC1-206ENST00000482879 RXRGP48443 463 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 ARRB1P49407 418 aaPredicted RBP12.02□□□□□ -0.49
SDC1-206ENST00000482879 CLCN7P51798 805 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 PGGT1BP53609 377 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 TIAL1Q01085 375 aaKnown RBP eCLIP12.02□□□□□ -0.49
SDC1-206ENST00000482879 ZNF844Q08AG5 666 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 ILF3Q12906 894 aaKnown RBP eCLIP12.02□□□□□ -0.49
SDC1-206ENST00000482879 PDAP1Q13442 181 aaKnown RBP12.02□□□□□ -0.49
SDC1-206ENST00000482879 C1orf61Q13536 156 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 LRP8Q14114 963 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 BOP1Q14137 746 aaKnown RBP12.02□□□□□ -0.49
SDC1-206ENST00000482879 RASA2Q15283 850 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 TMED2Q15363 201 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 ZNF423Q2M1K9 1284 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 KRT71Q3SY84 523 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 PRRT3Q5FWE3 981 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 CEP85LQ5SZL2 805 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 TAF8Q7Z7C8 310 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 RIBC1Q8N443 379 aaPredicted RBP12.02□□□□□ -0.49
SDC1-206ENST00000482879 SIDT2Q8NBJ9 832 aaKnown RBP12.02□□□□□ -0.49
SDC1-206ENST00000482879 OR2L2Q8NH16 312 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 CCL4L1Q8NHW4 92 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 HM13Q8TCT9 377 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 GPBAR1Q8TDU6 330 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 LMX1AQ8TE12 382 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 INPP5DQ92835 1189 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 ZBTB9Q96C00 473 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 MTBPQ96DY7 904 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 TSPAN17Q96FV3 270 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 RUFY1Q96T51 708 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 GSDMCQ9BYG8 508 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 OSGEPL1Q9H4B0 414 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 GAREM1Q9H706 876 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 LATS2Q9NRM7 1088 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 NCDNQ9UBB6 729 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 SPASTQ9UBP0 616 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 TRMT6Q9UJA5 497 aaKnown RBP12.02□□□□□ -0.49
SDC1-206ENST00000482879 KCNK6Q9Y257 313 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 DHRS7Q9Y394 339 aa12.02□□□□□ -0.49
SDC1-206ENST00000482879 EP300Q09472 2414 aaPredicted RBP12.02□□□□□ -0.49
SDC1-206ENST00000482879 DYNC1I1O14576 645 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 LIN7AO14910 233 aaPredicted RBP12.01□□□□□ -0.49
SDC1-206ENST00000482879 SDC3O75056 442 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 PIAS2O75928 621 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 CER1O95813 267 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 ZNF806P0C7X5 589 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 STMN1P16949 149 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 ENGP17813 658 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 TYK2P29597 1187 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 ACTR1BP42025 376 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 ACTR1AP61163 376 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 DMPKQ09013 629 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 SPEM2Q0P670 501 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 HSPA14Q0VDF9 509 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 BNIP3Q12983 259 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 DNAJC3Q13217 504 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 NFE2L1Q14494 772 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 ELOCQ15369 112 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 TTLL9Q3SXZ7 439 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 SYTL3Q4VX76 610 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 PLEKHS1Q5SXH7 462 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 TCEAL6Q6IPX3 200 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 PAQR3Q6TCH7 311 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 FAM83HQ6ZRV2 1179 aaPredicted RBP12.01□□□□□ -0.49
SDC1-206ENST00000482879 RAPH1Q70E73 1250 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 CMC1Q7Z7K0 106 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 CROCCP2Q86T23 111 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 PIM3Q86V86 326 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 NRROSQ86YC3 692 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 SPNS2Q8IVW8 549 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 CEP97Q8IW35 865 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 CYP4X1Q8N118 509 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 CNPY4Q8N129 248 aa12.01□□□□□ -0.49
SDC1-206ENST00000482879 FSTL5Q8N475 847 aaPredicted RBP12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms