RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 PITRM1Q5JRX3 1037 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 KIAA2013Q8IYS2 634 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 ZCCHC7Q8N3Z6 543 aaKnown RBP14.03□□□□□ -0.16
NPHP4-208ENST00000478423 HERVK_113Q902F9 699 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 MS4A4AQ96JQ5 239 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 NUSAP1Q9BXS6 441 aaKnown RBP14.03□□□□□ -0.16
NPHP4-208ENST00000478423 ALG2Q9H553 416 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 OR10H1Q9Y4A9 318 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 PALM2-AKAP2B1ALY0 433 aaPredicted RBP14.03□□□□□ -0.16
NPHP4-208ENST00000478423 PRDX6P30041 224 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 RPL5P46777 297 aaKnown RBP14.03□□□□□ -0.16
NPHP4-208ENST00000478423 TRIM25Q14258 630 aaKnown RBP14.03□□□□□ -0.16
NPHP4-208ENST00000478423 MED27Q6P2C8 311 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 KLK6Q92876 244 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 MTERF1Q99551 399 aaKnown RBP14.03□□□□□ -0.16
NPHP4-208ENST00000478423 OR2AG1Q9H205 316 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 ARHGEF3Q9NR81 526 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 PCDHGA11Q9Y5H2 935 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 TLL2Q9Y6L7 1015 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 TAF1P21675 1872 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 ELOVL7A1L3X0 281 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 EME2A4GXA9 379 aaPredicted RBP14.03□□□□□ -0.16
NPHP4-208ENST00000478423 FAM149AA5PLN7 773 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 WNT9AO14904 365 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 CDC42P60953 191 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 MPP2Q14168 576 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 SIX1Q15475 284 aaPredicted RBP14.03□□□□□ -0.16
NPHP4-208ENST00000478423 FAM174BQ3ZCQ3 159 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 DCAF4L2Q8NA75 395 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 XAGE5Q8WWM1 108 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 CDK15Q96Q40 435 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 C1orf109Q9NX04 203 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 LYVE1Q9Y5Y7 322 aa14.03□□□□□ -0.16
NPHP4-208ENST00000478423 TMEM233B4DJY2 109 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 MYL12BO14950 172 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 OR10H3O60404 316 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 DLGAP3O95886 979 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 CYBAP13498 195 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 GTF2E2P29084 291 aaKnown RBP14.02□□□□□ -0.16
NPHP4-208ENST00000478423 BUD31P41223 144 aaPredicted RBP14.02□□□□□ -0.16
NPHP4-208ENST00000478423 APLP1P51693 650 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 C16orf72Q14CZ0 275 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 EPHX4Q8IUS5 362 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 WFIKKN2Q8TEU8 576 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 MTERF3Q96E29 417 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 ZNF780BQ9Y6R6 833 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 COCHO43405 550 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 ECI2O75521 394 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 VIPP01282 170 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 EPOP01588 193 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 CSF2RAP15509 400 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 TTKP33981 857 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 NR1H2P55055 460 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 LEMD2Q8NC56 503 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 PHC3Q8NDX5 983 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 C1orf74Q96LT6 269 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 ZDHHC3Q9NYG2 299 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 KLHL3Q9UH77 587 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 SAMD4AQ9UPU9 718 aaKnown RBP14.02□□□□□ -0.16
NPHP4-208ENST00000478423 SH3GLB1Q9Y371 365 aa14.02□□□□□ -0.16
NPHP4-208ENST00000478423 CDC7O00311 574 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 SLC28A2O43868 658 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 UQCRBP14927 111 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 SEC13P55735 322 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 SPIBQ01892 262 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 MORN1Q5T089 497 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 UBXN11Q5T124 520 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 CCDC103Q8IW40 242 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 LIX1Q8N485 282 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 SMG9Q9H0W8 520 aaKnown RBP14.02□□□□□ -0.17
NPHP4-208ENST00000478423 PNPLA3Q9NST1 481 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 IKZF3Q9UKT9 509 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 FADS3Q9Y5Q0 445 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 KLF11O14901 512 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 DCLK1O15075 740 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 EFNA1P20827 205 aaPredicted RBP14.02□□□□□ -0.17
NPHP4-208ENST00000478423 LY6G5CQ5SRR4 150 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 PPP2R2DQ66LE6 453 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 GRASPQ7Z6J2 395 aaPredicted RBP14.02□□□□□ -0.17
NPHP4-208ENST00000478423 CILP2Q8IUL8 1156 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 POP5Q969H6 163 aaKnown RBP14.02□□□□□ -0.17
NPHP4-208ENST00000478423 SLC47A1Q96FL8 570 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 ZNF607Q96SK3 696 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 RIOK2Q9BVS4 552 aaKnown RBP14.02□□□□□ -0.17
NPHP4-208ENST00000478423 EBPLQ9BY08 206 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 C6orf62Q9GZU0 229 aaPredicted RBP14.02□□□□□ -0.17
NPHP4-208ENST00000478423 SLC7A8Q9UHI5 535 aa14.02□□□□□ -0.17
NPHP4-208ENST00000478423 CNOT6Q9ULM6 557 aaKnown RBP14.02□□□□□ -0.17
NPHP4-208ENST00000478423 LOC100506127A0A0U1RQW1 187 aa14.01□□□□□ -0.17
NPHP4-208ENST00000478423 E7ESA3 106 aa14.01□□□□□ -0.17
NPHP4-208ENST00000478423 FPGTO14772 594 aa14.01□□□□□ -0.17
NPHP4-208ENST00000478423 KDELR3O43731 214 aa14.01□□□□□ -0.17
NPHP4-208ENST00000478423 PRPS2P11908 318 aa14.01□□□□□ -0.17
NPHP4-208ENST00000478423 IVDP26440 423 aa14.01□□□□□ -0.17
NPHP4-208ENST00000478423 HMGCS1Q01581 520 aa14.01□□□□□ -0.17
NPHP4-208ENST00000478423 RING1Q06587 406 aa14.01□□□□□ -0.17
NPHP4-208ENST00000478423 ILF3Q12906 894 aaKnown RBP eCLIP14.01□□□□□ -0.174e-7■■■■□ 25.5
NPHP4-208ENST00000478423 IRF5Q13568 498 aa14.01□□□□□ -0.17
NPHP4-208ENST00000478423 RFX4Q33E94 735 aa14.01□□□□□ -0.17
NPHP4-208ENST00000478423 LDLRAP1Q5SW96 308 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms