RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 DDX18Q9NVP1 670 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 CABIN1Q9Y6J0 2220 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 MROH6A6NGR9 719 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 NPHS1O60500 1241 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 RNASEH1O60930 286 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 RNASEH2AO75792 299 aaKnown RBP13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 PGLSO95336 258 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 HTR7P34969 479 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 METAP1P53582 386 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 SEC13P55735 322 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 NAE1Q13564 534 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 RAET1GQ6H3X3 334 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 RETREG3Q86VR2 466 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 ZSWIM9Q86XI8 627 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 CD200R1Q8TD46 325 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 MBD1Q9UIS9 605 aaPredicted RBP13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 PLAGL1Q9UM63 463 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 AP4B1Q9Y6B7 739 aa13.54□□□□□ -0.24
CCDC88A-211ENST00000471947 IGLV3-10A0A075B6K4 115 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 GNG14A0A1W2PPG7 69 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 HK3P52790 923 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 ERVPABLB-1P60509 514 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 ZNF284Q2VY69 593 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 FAM174BQ3ZCQ3 159 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 GTDC1Q4AE62 458 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 TMEM214Q6NUQ4 689 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 NCEH1Q6PIU2 408 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 CHST15Q7LFX5 561 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 ST13P4Q8IZP2 240 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 ZBTB2Q8N680 514 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 SPDYE1Q8NFV5 336 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 MAGED4Q96JG8 741 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 COQ10BQ9H8M1 238 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 IL17CQ9P0M4 197 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 STK39Q9UEW8 545 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 LIMD1Q9UGP4 676 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 SORCS3Q9UPU3 1222 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 SLC22A3O75751 556 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 MTHFD2P13995 350 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 VCLP18206 1134 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 SPAM1P38567 509 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 ZNF140P52738 457 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 CDH15P55291 814 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 ZNF33AQ06730 810 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 NFATC2Q13469 925 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 ABRAXAS2Q15018 415 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 TPGS2Q68CL5 300 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 PGAM4Q8N0Y7 254 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 FAR2Q96K12 515 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 PHF12Q96QT6 1004 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 ADNPQ9H2P0 1102 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 PCDHGB4Q9UN71 923 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 PCDHGB5Q9Y5G0 923 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 TRIM38O00635 465 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 OR6B1O95007 311 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 SRCP12931 536 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 EPB42P16452 691 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 IL10P22301 178 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 IRF8Q02556 426 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 SMARCB1Q12824 385 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 PDK3Q15120 406 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 TTLL9Q3SXZ7 439 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 FAM109BQ6ICB4 259 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 SUSD1Q6UWL2 747 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 MMAAQ8IVH4 418 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 FLCNQ8NFG4 579 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 FAM162AQ96A26 154 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 MIEF2Q96C03 454 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 PLEKHG4BQ96PX9 1271 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 CENPKQ9BS16 269 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 TUBB1Q9H4B7 451 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 LHX3Q9UBR4 397 aa13.53□□□□□ -0.24
CCDC88A-211ENST00000471947 SEC16AO15027 2179 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 GRM6O15303 877 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 KERAO60938 352 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 DIRAS1O95057 198 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 FKBP9O95302 570 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 F11P03951 625 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 ACADSP16219 412 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 YAP1P46937 504 aaKnown RBP13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 RAP1GDS1P52306 607 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 MTTPP55157 894 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 SATB1Q01826 763 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 RAB33AQ14088 237 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 GRIN2CQ14957 1233 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 ZNF621Q6ZSS3 439 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 FKBP9P1Q75LS8 142 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 GOLGA7Q7Z5G4 137 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 KIAA1191Q96A73 305 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 TMEM159Q96B96 161 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 RNF31Q96EP0 1072 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 UBXN10Q96LJ8 280 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 SIKE1Q9BRV8 207 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 MMADHCQ9H3L0 296 aaPredicted RBP13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 ARNT2Q9HBZ2 717 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 SPASTQ9UBP0 616 aa13.52□□□□□ -0.24
CCDC88A-211ENST00000471947 ZNF189O75820 626 aaPredicted RBP13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 ELFN1P0C7U0 828 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 DGKAP23743 735 aa13.52□□□□□ -0.25
CCDC88A-211ENST00000471947 DGKEP52429 567 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms