RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-209	ENST00000469511	TMEM26	Q6ZUK4	368 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	GDF7	Q7Z4P5	450 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	SYVN1	Q86TM6	617 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	NOP9	Q86U38	636 aa	Known RBP	5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	PPP1R3B	Q86XI6	285 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	GALNT13	Q8IUC8	556 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	PLXDC1	Q8IUK5	500 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	ARHGAP12	Q8IWW6	846 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	UMODL1-AS1	Q8N2C9	162 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	AGGF1	Q8N302	714 aa	eCLIP	5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	TTC30B	Q8N4P2	665 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	ARFGAP1	Q8N6T3	406 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	ENDOV	Q8N8Q3	282 aa	Known RBP	5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	GLIS1	Q8NBF1	620 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	ST6GALNAC3	Q8NDV1	305 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	GRHL3	Q8TE85	626 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	CPLX3	Q8WVH0	158 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	CASKIN2	Q8WXE0	1202 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	CENPI	Q92674	756 aa	Predicted RBP	5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	MR1	Q95460	341 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	SNX21	Q969T3	373 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	COX14	Q96I36	57 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	TUBGCP5	Q96RT8	1024 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	RIOK2	Q9BVS4	552 aa	Known RBP	5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	ZNF552	Q9H707	407 aa	Predicted RBP	5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	ATP13A3	Q9H7F0	1226 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	GPR83	Q9NYM4	423 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	COPG2	Q9UBF2	871 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	CNOT8	Q9UFF9	292 aa	Known RBP	5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	DNAJC12	Q9UKB3	198 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	AP4E1	Q9UPM8	1137 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	B3GNT3	Q9Y2A9	372 aa		5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	INTS1	Q8N201	2190 aa	Known RBP	5.18	□□□□□ -1.58
PTPN4-209	ENST00000469511	ABCA4	P78363	2273 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	SSU72P8	A0A1W2PR75	194 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	LILRA5	A6NI73	299 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	OR52A4P	A6NMU1	304 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	FADS2P1	A8MWK0	482 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511		K7ELQ4	463 aa	Predicted RBP	5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	HTRA2	O43464	458 aa	Predicted RBP	5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	ALOX12B	O75342	701 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	PALM	O75781	387 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	UBXN7	O94888	489 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	ALX3	O95076	343 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	F3	P13726	295 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	AMD1	P17707	334 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	ITGA3	P26006	1051 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	NOS3	P29474	1203 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	RFC1	P35251	1148 aa	Predicted RBP	5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	KIR3DL1	P43629	444 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	NOP2	P46087	812 aa	Known RBP	5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	CSNK1D	P48730	415 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	KCNK10	P57789	538 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	ETF1	P62495	437 aa	Known RBP	5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	RPS15	P62841	145 aa	Known RBP	5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	NOMO3	P69849	1222 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	CETN1	Q12798	172 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	PTP4A2	Q12974	167 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	TUBB3	Q13509	450 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	SEPT7	Q16181	437 aa	Known RBP	5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	PTCHD3	Q3KNS1	767 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	PLA2G4E	Q3MJ16	856 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	NAA35	Q5VZE5	725 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	IRGC	Q6NXR0	463 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	SCYL2	Q6P3W7	929 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	WDR59	Q6PJI9	974 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511		Q6ZS92	163 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	SLC9B2	Q86UD5	537 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	ZDHHC17	Q8IUH5	632 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	FAM71A	Q8IYT1	594 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	TAB3	Q8N5C8	712 aa	Predicted RBP	5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	NPW	Q8N729	165 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	PAF1	Q8N7H5	531 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	AMER2	Q8N7J2	671 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	KCT2	Q8NC54	265 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	TMEM35B	Q8NCS4	154 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	SLC30A5	Q8TAD4	765 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	FAM172A	Q8WUF8	416 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	SLC20A1	Q8WUM9	679 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	PIH1D2	Q8WWB5	315 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	WFDC12	Q8WWY7	111 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	NELFB	Q8WX92	580 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	AP2M1	Q96CW1	435 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	FAM46A	Q96IP4	442 aa	Known RBP	5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	SLC41A2	Q96JW4	573 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	NRTN	Q99748	197 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	MAP3K3	Q99759	626 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	GPR87	Q9BY21	358 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	NOD2	Q9HC29	1040 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	REV1	Q9UBZ9	1251 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	TRIM10	Q9UDY6	481 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	MAN1B1	Q9UKM7	699 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	CFAP45	Q9UL16	551 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	RARRES3	Q9UL19	164 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	TCFL5	Q9UL49	500 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	CTNND2	Q9UQB3	1225 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	NEU2	Q9Y3R4	380 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	UTP18	Q9Y5J1	556 aa	Known RBP eCLIP	5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	CORIN	Q9Y5Q5	1042 aa		5.17	□□□□□ -1.58
PTPN4-209	ENST00000469511	ACTL7B	Q9Y614	415 aa		5.17	□□□□□ -1.58

Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms