RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 TTYH2Q9BSA4 534 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 TRMOQ9BU70 441 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 DCSTAMPQ9H295 470 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 PARVBQ9HBI1 364 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 HACD3Q9P035 362 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 HACL1Q9UJ83 578 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 LOC100506127A0A0U1RQW1 187 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 EFCAB9A8MZ26 197 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 SOCS7O14512 581 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 MTSS1O43312 755 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 HBP1O60381 514 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 PAPSS2O95340 614 aaPredicted RBP11.56□□□□□ -0.56
CPSF3-202ENST00000460593 MYL3P08590 195 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 PIK3CGP48736 1102 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 GALNT1Q10472 559 aaPredicted RBP11.56□□□□□ -0.56
CPSF3-202ENST00000460593 TSNQ15631 228 aaKnown RBP11.56□□□□□ -0.56
CPSF3-202ENST00000460593 NDUFA5Q16718 116 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 C18orf21Q32NC0 220 aaPredicted RBP11.56□□□□□ -0.56
CPSF3-202ENST00000460593 ZNF691Q5VV52 312 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 LYPD8Q6UX82 237 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 RFPL4BQ6ZWI9 263 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 AHSA2Q719I0 299 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 PROSER1Q86XN7 944 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 C10orf111Q8N326 155 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 BEST2Q8NFU1 509 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 TRIM39Q9HCM9 518 aa11.56□□□□□ -0.56
CPSF3-202ENST00000460593 TMEFF2Q9UIK5 374 aaPredicted RBP11.56□□□□□ -0.56
CPSF3-202ENST00000460593 NUP214P35658 2090 aaPredicted RBP11.56□□□□□ -0.56
CPSF3-202ENST00000460593 TNFRSF10AO00220 468 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 MAFKO60675 156 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 ANXA9O76027 345 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 RECQL5O94762 991 aaPredicted RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 OR4F21O95013 312 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 STAU1O95793 577 aaKnown RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 G6PDP11413 515 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 DCTP40126 519 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 CD86P42081 329 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 CLK1P49759 484 aaKnown RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 CLCNKBP51801 687 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 MRPS15P82914 257 aaKnown RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 MVKQ03426 396 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 FOXM1Q08050 763 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 MADCAM1Q13477 382 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 RANBP10Q6VN20 620 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 MILR1Q7Z6M3 343 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 RAB44Q7Z6P3 723 aaPredicted RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 TAC4Q86UU9 113 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 LRRC49Q8IUZ0 686 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 FAM126BQ8IXS8 530 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 FAM162AQ96A26 154 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 ZNF583Q96ND8 569 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 FCRL5Q96RD9 977 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 NT5MQ9NPB1 228 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 COMMD8Q9NX08 183 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 VPS4AQ9UN37 437 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 PHIPQ8WWQ0 1821 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 MICAL3Q7RTP6 2002 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 SLC12A8A0AV02 714 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 UBA6A0AVT1 1052 aaPredicted RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 B3GALT4O96024 378 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 KRT8P05787 483 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 CYP2C18P33260 490 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 DAOAP59103 153 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 TP53BP2Q13625 1128 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 PLPPR4Q7Z2D5 763 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 CYP4Z1Q86W10 505 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 DCP2Q8IU60 420 aaKnown RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 PHF10Q8WUB8 498 aaKnown RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 PROX1Q92786 737 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 TSPAN17Q96FV3 270 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 ZBED3Q96IU2 234 aaPredicted RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 ZFYVE19Q96K21 471 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 VAT1Q99536 393 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 BEX2Q9BXY8 128 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 MAGEL2Q9UJ55 1249 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 SBF1O95248 1867 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 MCM3APO60318 1980 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 KATNA1O75449 491 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 C1QCP02747 245 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 FGF4P08620 206 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 GGT1P19440 569 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 DNAJB1P25685 340 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 HOXA11P31270 313 aaPredicted RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 CCR1P32246 355 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 SCNN1AP37088 669 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 LIPAP38571 399 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 GABARAPL2P60520 117 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 DSC2Q02487 901 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 GTF2H3Q13889 308 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 GBX1Q14549 363 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 ATAD3CQ5T2N8 411 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 FBXO39Q8N4B4 442 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 OR52B6Q8NGF0 335 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 ISG20Q96AZ6 181 aaKnown RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 TNKS2Q9H2K2 1166 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 CPNE5Q9HCH3 593 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 TRMT13Q9NUP7 481 aaKnown RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 DNAJB9Q9UBS3 223 aa11.55□□□□□ -0.56
CPSF3-202ENST00000460593 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.55□□□□□ -0.56
CPSF3-202ENST00000460593 MOSPD1Q9UJG1 213 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms