RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	CLCA2	Q9UQC9	943 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	MSRB2	Q9Y3D2	182 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	OR2AG2	A6NM03	316 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	GOLGA8M	H3BSY2	632 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	SNX2	O60749	519 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	FUCA1	P04066	466 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	UBE2I	P63279	158 aa	Known RBP	10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	FOXC1	Q12948	553 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	CRYM	Q14894	314 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	KHDC1	Q4VXA5	237 aa	Known RBP	10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	GUSBP11	Q6P575	273 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	SLCO6A1	Q86UG4	719 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	KCNMB4	Q86W47	210 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	ZNF547	Q8IVP9	402 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	NAGS	Q8N159	534 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	ART4	Q93070	314 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	RAB11FIP5	Q9BXF6	653 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	FAM96A	Q9H5X1	160 aa		10.5	□□□□□ -0.73
UBR4-208	ENST00000459947	GIPC1	O14908	333 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	MTX2	O75431	263 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	CELA2B	P08218	269 aa	Predicted RBP	10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	MTHFD1	P11586	935 aa	Known RBP	10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	JUP	P14923	745 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	TTC23L	Q6PF05	361 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	UNC5D	Q6UXZ4	953 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	SPRED1	Q7Z699	444 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	SLC26A11	Q86WA9	606 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	MAGEC3	Q8TD91	643 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	SLC37A2	Q8TED4	501 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	ELMO1	Q92556	727 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	FOPNL	Q96NB1	174 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	CD180	Q99467	661 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	TOR4A	Q9NXH8	423 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	RNF215	Q9Y6U7	377 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	NTN3	O00634	580 aa	Predicted RBP	10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	ZNF500	O60304	480 aa	Predicted RBP	10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	ENO3	P13929	434 aa	Predicted RBP	10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	CD9	P21926	228 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	CCKBR	P32239	447 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	ARCN1	P48444	511 aa	Known RBP	10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	MGAT5	Q09328	741 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	DNAJC3	Q13217	504 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	KRT33B	Q14525	404 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	FAM182A	Q5T1J6	154 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	TMEM26	Q6ZUK4	368 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	NEK10	Q6ZWH5	1172 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	CNTN4	Q8IWV2	1026 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	PIANP	Q8IYJ0	282 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	DCBLD1	Q8N8Z6	715 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	EIF1AD	Q8N9N8	165 aa	Known RBP	10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	SEC14L1	Q92503	715 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	MFSD3	Q96ES6	412 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	TRIM31	Q9BZY9	425 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	NRSN2	Q9GZP1	204 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	LATS2	Q9NRM7	1088 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	TBC1D29	Q9UFV1	150 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	TDRD6	O60522	2096 aa	Known RBP	10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	TOX3	O15405	576 aa	Predicted RBP	10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	FKBP9	O95302	570 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	CPNE6	O95741	557 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	PKM	P14618	531 aa	Known RBP	10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	CCNF	P41002	786 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	B4GALNT1	Q00973	533 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	PDIA2	Q13087	525 aa	Known RBP	10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	PLA2G4E	Q3MJ16	856 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	ZNF648	Q5T619	568 aa	Predicted RBP	10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	PDZD3	Q86UT5	571 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	CILP2	Q8IUL8	1156 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	CCL4L1	Q8NHW4	92 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	PYROXD1	Q8WU10	500 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	SGF29	Q96ES7	293 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	CERS2	Q96G23	380 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	RAB33B	Q9H082	229 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	DPH5	Q9H2P9	285 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	ARFGAP3	Q9NP61	516 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	TEX264	Q9Y6I9	313 aa		10.49	□□□□□ -0.73
UBR4-208	ENST00000459947	ZFC3H1	O60293	1989 aa	Known RBP	10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	ZCWPW2	A0A1B0GU75	182 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	HGS	O14964	777 aa	Predicted RBP	10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	CBSL	P0DN79	551 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	PBLD	P30039	288 aa	Predicted RBP	10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	STX2	P32856	288 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	PHB	P35232	272 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	CBS	P35520	551 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	HES3	Q5TGS1	186 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	ARMC6	Q6NXE6	501 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	PLXDC1	Q8IUK5	500 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	PALM2	Q8IXS6	379 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	IFT20	Q8IY31	132 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	DGCR8	Q8WYQ5	773 aa	Known RBP eCLIP	10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	LIN37	Q96GY3	246 aa	Predicted RBP	10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	ZMYND15	Q9H091	742 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	P2RY12	Q9H244	342 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	FBXO5	Q9UKT4	447 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	DNAJC16	Q9Y2G8	782 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	CCDC187	A0A096LP49	1063 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	SKIV2L2	P42285	1042 aa	Known RBP	10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	MAZ	P56270	477 aa	Known RBP	10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	NAA25	Q14CX7	972 aa		10.48	□□□□□ -0.73
UBR4-208	ENST00000459947	MAP9	Q49MG5	647 aa		10.48	□□□□□ -0.73

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms