RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 NAE1Q13564 534 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 CAPSQ13938 189 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 PTGR1Q14914 329 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 INPP5JQ15735 1006 aaPredicted RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 SOWAHAQ2M3V2 549 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 KRTAP27-1Q3LI81 207 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 CDONQ4KMG0 1287 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 SGO1Q5FBB7 561 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 KRBOX4Q5JUW0 171 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 CST9LP1Q5W188 147 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 NCAPH2Q6IBW4 605 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 PET117Q6UWS5 81 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 TOM1L2Q6ZVM7 507 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 RUFY3Q7L099 469 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 ZDHHC23Q8IYP9 409 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 HACE1Q8IYU2 909 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 SCYL3Q8IZE3 742 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 TMCO5AQ8N6Q1 288 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 SLC44A5Q8NCS7 719 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 MCPH1Q8NEM0 835 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 SETD6Q8TBK2 473 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 ANP32BQ92688 251 aaKnown RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 FER1L6-AS2Q96M78 137 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 ZNF570Q96NI8 536 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 FNBP1Q96RU3 617 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 NAA11Q9BSU3 229 aaPredicted RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 FSD1Q9BTV5 496 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 HGH1Q9BTY7 390 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 THUMPD3Q9BV44 507 aaKnown RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 DENND2DQ9H6A0 471 aaPredicted RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 RETREG1Q9H6L5 497 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 PDRG1Q9NUG6 133 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 OSGIN1Q9UJX0 560 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 UTS2RQ9UKP6 389 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 SMC3Q9UQE7 1217 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 ZFP37Q9Y6Q3 630 aaPredicted RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 A3GALT2U3KPV4 340 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 RGPD2P0DJD1 1756 aa4.14□□□□□ -1.75
VPS29-202ENST00000447578 N4BP2Q86UW6 1770 aaPredicted RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 RPAP1Q9BWH6 1393 aaPredicted RBP4.14□□□□□ -1.75
VPS29-202ENST00000447578 DCCP43146 1447 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 TCF20Q9UGU0 1960 aaKnown RBP4.13□□□□□ -1.75
VPS29-202ENST00000447578 LOC102723996A0A087X1L8 192 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 GPR75-ASB3A0A0A6YYF3 556 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 BICDL2A1A5D9 508 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 SYCE3A1L190 88 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 FOXO6A8MYZ6 492 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 F8W810 466 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 HSPB6O14558 160 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 KLK8O60259 260 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 ATG13O75143 517 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 TADA2AO75478 443 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 MBD3O95983 291 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 FYNP06241 537 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 UNGP13051 313 aaPredicted RBP4.13□□□□□ -1.75
VPS29-202ENST00000447578 ATP6V1B1P15313 513 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 ERCC2P18074 760 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 PTAFRP25105 342 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 PRCPP42785 496 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 RFX5P48382 616 aaPredicted RBP4.13□□□□□ -1.75
VPS29-202ENST00000447578 CCR3P51677 355 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 TAS2R40P59535 323 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 PPP2R5CQ13362 524 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 NECTIN1Q15223 517 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 DLG2Q15700 870 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 SOWAHCQ53LP3 525 aaPredicted RBP4.13□□□□□ -1.75
VPS29-202ENST00000447578 ESCO2Q56NI9 601 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 ENTPD8Q5MY95 495 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 TTC39AQ5SRH9 613 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 TMEM198Q66K66 360 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 ZNF324BQ6AW86 544 aaPredicted RBP4.13□□□□□ -1.75
VPS29-202ENST00000447578 C11orf88Q6PI97 169 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 QSOX2Q6ZRP7 698 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 ZSCAN30Q86W11 494 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 ARID3BQ8IVW6 561 aaPredicted RBP4.13□□□□□ -1.75
VPS29-202ENST00000447578 CCDC83Q8IWF9 413 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 MCEMP1Q8IX19 187 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 SLC35F3Q8IY50 421 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 GUF1Q8N442 669 aaKnown RBP4.13□□□□□ -1.75
VPS29-202ENST00000447578 SLC25A41Q8N5S1 370 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 PARP16Q8N5Y8 322 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 ZBTB2Q8N680 514 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 ARL10Q8N8L6 244 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 LRRC57Q8N9N7 239 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 GDAP1Q8TB36 358 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 PTPMT1Q8WUK0 201 aaPredicted RBP4.13□□□□□ -1.75
VPS29-202ENST00000447578 IGSF8Q969P0 613 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 OTULINQ96BN8 352 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 RRNAD1Q96FB5 475 aaKnown RBP4.13□□□□□ -1.75
VPS29-202ENST00000447578 SLC41A2Q96JW4 573 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 CFAP57Q96MR6 1250 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 SPAG5Q96R06 1193 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 NUDCD1Q96RS6 583 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 CDRT15Q96T59 188 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 FAM110AQ9BQ89 295 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 PIMREGQ9BSJ6 248 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 ST6GALNAC4Q9H4F1 302 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 MVB12BQ9H7P6 319 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 PAG1Q9NWQ8 432 aa4.13□□□□□ -1.75
VPS29-202ENST00000447578 GDE1Q9NZC3 331 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms