RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 C5orf60A6NFR6 353 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 HEPACAM2A8MVW5 462 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 TO15178 435 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 SLC16A5O15375 505 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 LINC01565O15544 149 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 GRID2O43424 1007 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 BUB3O43684 328 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 SLCO2B1O94956 709 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 GCNT3O95395 438 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 APOA4P06727 396 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 TPOP07202 933 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 KRT19P08727 400 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 CPT2P23786 658 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 MT3P25713 68 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 MC5RP33032 325 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 FASLGP48023 281 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 AMPHP49418 695 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 PRKAA1Q13131 559 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 KYNUQ16719 465 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 C15orf59Q2T9L4 293 aaPredicted RBP3.39□□□□□ -1.87
VPS41-207ENST00000439468 ZNF718Q3SXZ3 478 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 RAB6CQ53S08 254 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 C1orf141Q5JVX7 400 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 FIGLAQ6QHK4 219 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 FAM47EQ6ZV65 393 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 Q75L30 129 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 KRT74Q7RTS7 529 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 CAMKMTQ7Z624 323 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 RNF113BQ8IZP6 322 aaKnown RBP3.39□□□□□ -1.87
VPS41-207ENST00000439468 GBGT1Q8N5D6 347 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 GCSAMQ8N6F7 178 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 POMGNT2Q8NAT1 580 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 CFAP61Q8NHU2 1237 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 VPS33AQ96AX1 596 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 NXNL1Q96CM4 212 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 CCDC34Q96HJ3 373 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 FAM81BQ96LP2 452 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 ZNF830Q96NB3 372 aaPredicted RBP3.39□□□□□ -1.87
VPS41-207ENST00000439468 ZMAT2Q96NC0 199 aaKnown RBP3.39□□□□□ -1.87
VPS41-207ENST00000439468 C16orf70Q9BSU1 422 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 AP1M1Q9BXS5 423 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 GPR88Q9GZN0 384 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 RAB6CQ9H0N0 254 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 OR10A4Q9H209 315 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 SLA2Q9H6Q3 261 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 OLAHQ9NV23 265 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 OSER1Q9NX31 292 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 ZNF224Q9NZL3 707 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 MDFICQ9P1T7 246 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 BCCIPQ9P287 314 aaKnown RBP eCLIP3.39□□□□□ -1.87
VPS41-207ENST00000439468 MARCH4Q9P2E8 410 aaPredicted RBP3.39□□□□□ -1.87
VPS41-207ENST00000439468 RHCGQ9UBD6 479 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 ANAPC2Q9UJX6 822 aa3.39□□□□□ -1.87
VPS41-207ENST00000439468 TMEM184BQ9Y519 407 aaPredicted RBP3.39□□□□□ -1.87
VPS41-207ENST00000439468 EIF4G1Q04637 1599 aaKnown RBP3.38□□□□□ -1.87
VPS41-207ENST00000439468 LOC100509620A0A075B734 347 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 A0A1B0GUV1 79 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 FEZF1A0PJY2 475 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 H7C0S8 307 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 NDUFS4O43181 175 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 KRT86O43790 486 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 DKC1O60832 514 aaKnown RBP eCLIP3.38□□□□□ -1.87
VPS41-207ENST00000439468 TOMM70O94826 608 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 C22orf31O95567 290 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 SNRNP70P08621 437 aaKnown RBP3.38□□□□□ -1.87
VPS41-207ENST00000439468 CDH1P12830 882 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 DAOP14920 347 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 MATR3P43243 847 aaKnown RBP eCLIP3.38□□□□□ -1.87
VPS41-207ENST00000439468 CCR3P51677 355 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 KRTAP10-6P60371 365 aaPredicted RBP3.38□□□□□ -1.87
VPS41-207ENST00000439468 KRTAP10-7P60409 375 aaPredicted RBP3.38□□□□□ -1.87
VPS41-207ENST00000439468 HNRNPKP61978 463 aaKnown RBP eCLIP3.38□□□□□ -1.87
VPS41-207ENST00000439468 POU3F1Q03052 451 aaPredicted RBP3.38□□□□□ -1.87
VPS41-207ENST00000439468 SNTA1Q13424 505 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 SNTB1Q13884 538 aaKnown RBP3.38□□□□□ -1.87
VPS41-207ENST00000439468 KRT81Q14533 505 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 MELKQ14680 651 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 SNAPC1Q16533 368 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 FAM76BQ5HYJ3 339 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 C9orf152Q5JTZ5 239 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 ZDHHC20Q5W0Z9 365 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 DHRS7BQ6IAN0 325 aaPredicted RBP3.38□□□□□ -1.87
VPS41-207ENST00000439468 OR7E24Q6IFN5 339 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 ASB18Q6ZVZ8 466 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 TC2NQ8N9U0 490 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 OR2AJ1Q8NGZ0 328 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 SPATA20Q8TB22 786 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 THAP6Q8TBB0 222 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 FIG4Q92562 907 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 SEMA4DQ92854 862 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 CNDP2Q96KP4 475 aaKnown RBP3.38□□□□□ -1.87
VPS41-207ENST00000439468 DACH2Q96NX9 599 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 OR6C1Q96RD1 312 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 BAG1Q99933 345 aaPredicted RBP3.38□□□□□ -1.87
VPS41-207ENST00000439468 MMP27Q9H306 513 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 DENND2DQ9H6A0 471 aaPredicted RBP3.38□□□□□ -1.87
VPS41-207ENST00000439468 OPA3Q9H6K4 179 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 TBC1D17Q9HA65 648 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 TRPC7Q9HCX4 862 aa3.38□□□□□ -1.87
VPS41-207ENST00000439468 TCP11L1Q9NUJ3 509 aa3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms