RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 C6orf136Q5SQH8 315 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 IQSEC1Q6DN90 963 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 PRR23CQ6ZRP0 262 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 RFLNAQ6ZTI6 216 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 TPGS1Q6ZTW0 290 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 NECAB2Q7Z6G3 386 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 TMEM179BQ7Z7N9 219 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 HMGN2P46Q86SG4 172 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 SLC22A9Q8IVM8 553 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 SFRP1Q8N474 314 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 C2orf73Q8N5S3 287 aaPredicted RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 TRPV3Q8NET8 790 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 TANKQ92844 425 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 HPS1Q92902 700 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 ISL2Q96A47 359 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 ULK4Q96C45 1275 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 IMP4Q96G21 291 aaKnown RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 MAELQ96JY0 434 aaKnown RBP8.54□□□□□ -1.04
USP40-203ENST00000427112 CSF3RQ99062 836 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 C9orf16Q9BUW7 83 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 ALOXE3Q9BYJ1 711 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 ATG10Q9H0Y0 220 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 ZNF229Q9UJW7 825 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 DERAQ9Y315 318 aa8.54□□□□□ -1.04
USP40-203ENST00000427112 PNMA8CA0A1B0GUJ8 204 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 ITPKAP23677 461 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 HUNKP57058 714 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 TXNL4AP83876 142 aaKnown RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 CRTC3Q6UUV7 619 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 GPRIN3Q6ZVF9 776 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 OR4F6Q8NGB9 312 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 PSMA8Q8TAA3 256 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 ARRDC2Q8TBH0 407 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 AUTS2Q8WXX7 1259 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 ZIC5Q96T25 663 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 SLC9A7Q96T83 725 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 IPPKQ9H8X2 491 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 AGPAT4Q9NRZ5 378 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 KCNH4Q9UQ05 1017 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 NEU3Q9UQ49 428 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 A8MV72 311 aaPredicted RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 ACOX3O15254 700 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 OPN1SWP03999 348 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 ATXN1LP0C7T5 689 aaKnown RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 HSPA1AP0DMV8 641 aaKnown RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 HSPA1BP0DMV9 641 aaKnown RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 CCNA2P20248 432 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 WEE1P30291 646 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 CAPGP40121 348 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 SH3BGRP55822 239 aaPredicted RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 NCS1P62166 190 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 LCP2Q13094 533 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 KCNAB2Q13303 367 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 ZBED5Q49AG3 693 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 ZNF648Q5T619 568 aaPredicted RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 RBM23Q86U06 439 aaKnown RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 TMEM173Q86WV6 379 aaPredicted RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 SLC44A2Q8IWA5 706 aaPredicted RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 UBE2J2Q8N2K1 259 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 NDNFQ8TB73 568 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 LKAAEAR1Q8TD35 194 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 FUBP1Q96AE4 644 aaKnown RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 DACT3Q96B18 629 aaPredicted RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 GPATCH1Q9BRR8 931 aaKnown RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 MCMBPQ9BTE3 642 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 POLR1EQ9GZS1 481 aaKnown RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 RNF167Q9H6Y7 350 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 FBXO9Q9UK97 447 aaPredicted RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 DNMT3AQ9Y6K1 912 aaPredicted RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 TMEM88BA6NKF7 163 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 RECQL5O94762 991 aaPredicted RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 COL6A1P12109 1028 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 GJA1P17302 382 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 SLC6A4P31645 630 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 CCT8P50990 548 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 HSPA14Q0VDF9 509 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 SCAPQ12770 1279 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 BLOC1S3Q6QNY0 202 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 RNF19BQ6ZMZ0 732 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 VTCN1Q7Z7D3 282 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 ZDHHC13Q8IUH4 622 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 DCP1BQ8IZD4 617 aaKnown RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 STAG3L4Q8TBR4 150 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 TBC1D15Q8TC07 691 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 PROKR1Q8TCW9 393 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 SEPT8Q92599 483 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 MS4A4AQ96JQ5 239 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 SH3GL1Q99961 368 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 INPP5KQ9BT40 448 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 ANKRD60Q9BZ19 345 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 GPR62Q9BZJ7 368 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 CIPCQ9C0C6 399 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 PLGRKTQ9HBL7 147 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 WWOXQ9NZC7 414 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 POU2F3Q9UKI9 436 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 CAB39Q9Y376 341 aaPredicted RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 KIAA0100Q14667 2235 aaKnown RBP8.53□□□□□ -1.04
USP40-203ENST00000427112 SBF1O95248 1867 aa8.53□□□□□ -1.04
USP40-203ENST00000427112 PARP14Q460N5 1801 aa8.52□□□□□ -1.04
USP40-203ENST00000427112 TRIM64CA6NLI5 447 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms