RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 VPS9D1Q9Y2B5 631 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 LRRC74AQ0VAA2 488 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 LIN28BQ6ZN17 250 aaKnown RBP eCLIP9.7□□□□□ -0.86
USP54-205ENST00000424265 UBASH3BQ8TF42 649 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 POF1BQ8WVV4 589 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 COPS4Q9BT78 406 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 RAB6BQ9NRW1 208 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 TLR6Q9Y2C9 796 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 INSL5Q9Y5Q6 135 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 ZNF646O15015 1829 aaPredicted RBP9.7□□□□□ -0.86
USP54-205ENST00000424265 ZNF487B1APH4 448 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 TCN1P20061 433 aaPredicted RBP9.7□□□□□ -0.86
USP54-205ENST00000424265 OR1E1P30953 314 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 PRIM2P49643 509 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 MORF4L2Q15014 288 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 GPR158Q5T848 1215 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 SEC22CQ9BRL7 303 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 IFT46Q9NQC8 304 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 PCYOX1Q9UHG3 505 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 DNPEPQ9ULA0 475 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 A0A0G2JPF8 293 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 HNRNPCL3B7ZW38 293 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 ST8SIA5O15466 376 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 NUPL2O15504 423 aaKnown RBP9.7□□□□□ -0.86
USP54-205ENST00000424265 EDN1P05305 212 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 RETP07949 1114 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 HNRNPCL4P0DMR1 293 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 ENO3P13929 434 aaPredicted RBP9.7□□□□□ -0.86
USP54-205ENST00000424265 SLC13A2Q13183 592 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 TOR2AQ5JU69 321 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 MARC1Q5VT66 337 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 XKRXQ6PP77 449 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 MFSD7Q6UXD7 560 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 GANCQ8TET4 914 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 TEKT5Q96M29 485 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 OR51B5Q9H339 312 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 SYNDIG1Q9H7V2 258 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 CRTAC1Q9NQ79 661 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 GPATCH2LQ9NWQ4 482 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 DNAJC28Q9NX36 388 aa9.7□□□□□ -0.86
USP54-205ENST00000424265 TRIM24O15164 1050 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 TBX1O43435 398 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 FAM189A1O60320 539 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 RHOQP17081 205 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 IMPDH1P20839 514 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 FMO4P31512 558 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 MTHFRP42898 656 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 HCAR3P49019 387 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 MPP7Q5T2T1 576 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 RAB43Q86YS6 212 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 ABHD11Q8NFV4 315 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 ACTL9Q8TC94 416 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 DDX1Q92499 740 aaKnown RBP9.69□□□□□ -0.86
USP54-205ENST00000424265 TWNKQ96RR1 684 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 GTPBP2Q9BX10 602 aaKnown RBP9.69□□□□□ -0.86
USP54-205ENST00000424265 IGSF5Q9NSI5 407 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 BAG5Q9UL15 447 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 PLA2G4CQ9UP65 541 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 MED26O95402 600 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 DCKP27707 260 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 GRM3Q14832 879 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 PARP15Q460N3 678 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 P3H2Q8IVL5 708 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 SLC29A1Q99808 456 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 SMOC2Q9H3U7 446 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 LRRC40Q9H9A6 602 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 SFXN1Q9H9B4 322 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 RNF112Q9ULX5 631 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 SHOC2Q9UQ13 582 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 MRPL42Q9Y6G3 142 aaKnown RBP9.69□□□□□ -0.86
USP54-205ENST00000424265 C2orf74A8MZ97 194 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 E7ENX8 843 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 FSCN2O14926 492 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 LATS1O95835 1130 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 RPL7AP62424 266 aaKnown RBP9.69□□□□□ -0.86
USP54-205ENST00000424265 SLC18A2Q05940 514 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 LAPTM5Q13571 262 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 CHI3L2Q15782 390 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 INAVAQ3KP66 663 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 FAM171BQ6P995 826 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 CFAP77Q6ZQR2 320 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 GLRX5Q86SX6 157 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 SNX29P2Q8IUI4 249 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 NXNL1Q96CM4 212 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 ZNF416Q9BWM5 594 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 C1QTNF7Q9BXJ2 289 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 C6orf62Q9GZU0 229 aaPredicted RBP9.69□□□□□ -0.86
USP54-205ENST00000424265 GHITMQ9H3K2 345 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 ATP13A1Q9HD20 1204 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 AJAP1Q9UKB5 411 aaPredicted RBP9.69□□□□□ -0.86
USP54-205ENST00000424265 PTPRFP10586 1907 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 MSH3P20585 1137 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 STARP49675 285 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 DNAJB7Q7Z6W7 309 aaPredicted RBP9.69□□□□□ -0.86
USP54-205ENST00000424265 TCEAL8Q8IYN2 117 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 PARP8Q8N3A8 854 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 OR6P1Q8NGX9 317 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 JOSD2Q8TAC2 188 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 OTUB2Q96DC9 234 aa9.69□□□□□ -0.86
USP54-205ENST00000424265 PRR11Q96HE9 360 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms