RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 LSP1P33241 339 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 TRIM23P36406 574 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 PDK4Q16654 411 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 TECRLQ5HYJ1 363 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 SLC36A4Q6YBV0 504 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 LRRTM4Q86VH4 590 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 STAG3L4Q8TBR4 150 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 FUBP1Q96AE4 644 aaKnown RBP16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 GPR34Q9UPC5 381 aa16.85■□□□□ 0.29
CCDC28B-202ENST00000421922 NPEPPSL1A6NEC2 478 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 PRAMEF26H0Y7S4 382 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 MAP3K13O43283 966 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 LATO43561 262 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 PDGFBP01127 241 aaPredicted RBP16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 S100BP04271 92 aaPredicted RBP16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 VIMP08670 466 aaKnown RBP16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 AOC1P19801 751 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 CCR7P32248 378 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 THOP1P52888 689 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 ACSBG2Q5FVE4 666 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 ATG16L1Q676U5 607 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 ZYG11AQ6WRX3 759 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 ADAMTSL2Q86TH1 951 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 RHEBL1Q8TAI7 183 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 KIAA1191Q96A73 305 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 CCDC126Q96EE4 140 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 PDLIM5Q96HC4 596 aaKnown RBP16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 GPR78Q96P69 363 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 MECRQ9BV79 373 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 FAM126AQ9BYI3 521 aaPredicted RBP16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 NSRP1Q9H0G5 558 aaKnown RBP16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 PCED1AQ9H1Q7 454 aa16.84■□□□□ 0.29
CCDC28B-202ENST00000421922 PLXND1Q9Y4D7 1925 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 MEI4A8MW99 385 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 SUPT3HB4E1H0 165 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 TOR1BO14657 336 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 LAMTOR5O43504 91 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 NUAK1O60285 661 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 KERAO60938 352 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 H2AFYO75367 372 aaKnown RBP16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 SUPT3HO75486 399 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 VCLP18206 1134 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 BGNP21810 368 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 PRKAA2P54646 552 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 CLDN2P57739 230 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 KIAA1024LP59773 190 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 RPL6Q02878 288 aaKnown RBP16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 TSNQ15631 228 aaKnown RBP16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 PLA2G4EQ3MJ16 856 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 NAPRTQ6XQN6 538 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 PIWIL4Q7Z3Z4 852 aaKnown RBP16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 RAB44Q7Z6P3 723 aaPredicted RBP16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 GALNT13Q8IUC8 556 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 FAM160A2Q8N612 972 aaPredicted RBP16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 RAB3IL1Q8TBN0 382 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 HM13Q8TCT9 377 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 LGR4Q9BXB1 951 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 CCDC134Q9H6E4 229 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 MANSC1Q9H8J5 431 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 RMI1Q9H9A7 625 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 ZNHIT2Q9UHR6 403 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 HS3ST3A1Q9Y663 406 aa16.83■□□□□ 0.28
CCDC28B-202ENST00000421922 KLHL33A6NCF5 533 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 TMEM221A6NGB7 291 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 TCP11X1B4DZS4 312 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 M0R296 226 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 LIN7AO14910 233 aaPredicted RBP16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 KMOO15229 486 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 GRID2O43424 1007 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 SGTAO43765 313 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 SNX2O60749 519 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 SHOX2O60902 331 aaPredicted RBP16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 IGHV4-34P06331 123 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 HOXC4P09017 264 aaPredicted RBP16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 TPBGLP0DKB5 382 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 MPC1LP0DKB6 136 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 GFAPP14136 432 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 ATP5F1P24539 256 aaPredicted RBP16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 ALDH3A1P30838 453 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 YPEL5P62699 121 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 PLOD1Q02809 727 aaPredicted RBP16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 NFATC4Q14934 902 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 PCLAFQ15004 111 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 CHI3L2Q15782 390 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 ISCA2Q86U28 154 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 SLC22A9Q8IVM8 553 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 C10orf107Q8IVU9 208 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 GLMNQ92990 594 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 PTERQ96BW5 349 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 BIRC7Q96CA5 298 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 WDR92Q96MX6 357 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 FOPNLQ96NB1 174 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 MBD1Q9UIS9 605 aaPredicted RBP16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 TMCO1Q9UM00 188 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 INVSQ9Y283 1065 aa16.82■□□□□ 0.28
CCDC28B-202ENST00000421922 POM121BA6NF01 834 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 K7ESF4 209 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 CDC7O00311 574 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 TRIM13O60858 407 aa16.81■□□□□ 0.28
CCDC28B-202ENST00000421922 POP7O75817 140 aaKnown RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms