RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 NEPROQ6NW34 567 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 DUS1LQ6P1R4 473 aaKnown RBP12.24□□□□□ -0.45
SKA1-203ENST00000417656 IYDQ6PHW0 289 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 ZDHHC24Q6UX98 284 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 ZNF438Q7Z4V0 828 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 SPRED1Q7Z699 444 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 MARCH9Q86YJ5 346 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 CCNJLQ8IV13 435 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 ANKMY2Q8IV38 441 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 MMGT1Q8N4V1 131 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 Q8N9G6 341 aaPredicted RBP12.24□□□□□ -0.45
SKA1-203ENST00000417656 OR6C4Q8NGE1 309 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 RMDN2Q96LZ7 410 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 CCM2Q9BSQ5 444 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 CARD6Q9BX69 1037 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 ASXL3Q9C0F0 2248 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 COG4Q9H9E3 785 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 VPS37BQ9H9H4 285 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 PLAC1Q9HBJ0 212 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 C20orf96Q9NUD7 363 aaPredicted RBP12.24□□□□□ -0.45
SKA1-203ENST00000417656 KLK13Q9UKR3 277 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 WASF3Q9UPY6 502 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 TEX264Q9Y6I9 313 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 SPEGQ15772 3267 aa12.24□□□□□ -0.45
SKA1-203ENST00000417656 FAM149AA5PLN7 773 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 E7ESA3 106 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 QSOX1O00391 747 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 PRMT5O14744 637 aaPredicted RBP12.23□□□□□ -0.45
SKA1-203ENST00000417656 PPM1DO15297 605 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 FTH1P02794 183 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 SLC35G4P0C7Q5 338 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 OR56A5P0C7T3 313 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 CDK4P11802 303 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 PPARGP37231 505 aaPredicted RBP12.23□□□□□ -0.45
SKA1-203ENST00000417656 HALP42357 657 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 SLC1A2P43004 574 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 FASLGP48023 281 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 PREPP48147 710 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 EIF3BP55884 814 aaKnown RBP12.23□□□□□ -0.45
SKA1-203ENST00000417656 UBE2IP63279 158 aaKnown RBP12.23□□□□□ -0.45
SKA1-203ENST00000417656 E2F1Q01094 437 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 HHEXQ03014 270 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 BOP1Q14137 746 aaKnown RBP12.23□□□□□ -0.45
SKA1-203ENST00000417656 CLCA4Q14CN2 919 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 ZNF658BQ4V348 819 aaPredicted RBP12.23□□□□□ -0.45
SKA1-203ENST00000417656 SPANXN3Q5MJ09 141 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.23□□□□□ -0.45
SKA1-203ENST00000417656 RNF187Q5TA31 235 aaPredicted RBP12.23□□□□□ -0.45
SKA1-203ENST00000417656 AGAP9Q5VTM2 703 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 ABRAXAS1Q6UWZ7 409 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 WASH2PQ6VEQ5 465 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 UNC5AQ6ZN44 842 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 CENPUQ71F23 418 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 SLC9B2Q86UD5 537 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 KCNMB4Q86W47 210 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 CILP2Q8IUL8 1156 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 DENND6AQ8IWF6 608 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 TRIM48Q8IWZ4 208 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 CFAP206Q8IYR0 622 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 KRT222Q8N1A0 295 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 CEP112Q8N8E3 955 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 FBXO36Q8NEA4 188 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 GPR150Q8NGU9 434 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 ELMO1Q92556 727 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 LPGAT1Q92604 370 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 LRRC39Q96DD0 335 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 HS3ST6Q96QI5 342 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 NAT9Q9BTE0 207 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 WWP1Q9H0M0 922 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 ABCG4Q9H172 646 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 P2RY12Q9H244 342 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 STN1Q9H668 368 aaKnown RBP12.23□□□□□ -0.45
SKA1-203ENST00000417656 SARS2Q9NP81 518 aaKnown RBP12.23□□□□□ -0.45
SKA1-203ENST00000417656 WASH6PQ9NQA3 447 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 ZNF624Q9P2J8 865 aaPredicted RBP12.23□□□□□ -0.45
SKA1-203ENST00000417656 CPNE7Q9UBL6 633 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 ZC3H7BQ9UGR2 993 aaKnown RBP12.23□□□□□ -0.45
SKA1-203ENST00000417656 GNPTGQ9UJJ9 305 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 FAM169AQ9Y6X4 670 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 NCOR2Q9Y618 2525 aa12.23□□□□□ -0.45
SKA1-203ENST00000417656 PRAMEF33A0A0G2JMD5 474 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 A0A1W2PQM1 296 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 KLHL33A6NCF5 533 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 OR5K4A6NMS3 321 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 IQCF5A8MTL0 148 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 TTC4O95801 387 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 ERVK-10P10266 1014 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 RPS3P23396 243 aaKnown RBP eCLIP12.22□□□□□ -0.45
SKA1-203ENST00000417656 SLC19A1P41440 591 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 PLTPP55058 493 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 OR1D5P58170 312 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 CCL7P80098 99 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 MPP1Q00013 466 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 GUCY2DQ02846 1103 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 CTBP1Q13363 440 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 NR1D2Q14995 579 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 RPE65Q16518 533 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 SYTL3Q4VX76 610 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 HSP90AA5PQ58FG0 334 aa12.22□□□□□ -0.45
SKA1-203ENST00000417656 ZNF789Q5FWF6 425 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms