RNA–Protein interactions for RNA: ENST00000413409.6

PTPRC-206, Transcript of protein tyrosine phosphatase, receptor type C, humanhuman

TSL 1 (best) BASIC

Gene PTPRC, Length 1,338 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRC-206ENST00000413409 NFKB2Q00653 900 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 SEMG2Q02383 582 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 SEMA3AQ14563 771 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 AARS2Q5JTZ9 985 aaKnown RBP16.92■□□□□ 0.3
PTPRC-206ENST00000413409 LY6G5CQ5SRR4 150 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 ZNF549Q6P9A3 640 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 EPGNQ6UW88 154 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 LRRC69Q6ZNQ3 347 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 SLC22A9Q8IVM8 553 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 ETFBKMTQ8IXQ9 262 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 NAT16Q8N8M0 369 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 ZNF557Q8N988 423 aaPredicted RBP16.92■□□□□ 0.3
PTPRC-206ENST00000413409 OR4K2Q8NGD2 314 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 KCNV2Q8TDN2 545 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 LPGAT1Q92604 370 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 FOXJ1Q92949 421 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 BTBD10Q9BSF8 475 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 TBC1D10AQ9BXI6 508 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 SEMA4CQ9C0C4 833 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 SUDS3Q9H7L9 328 aaPredicted RBP16.92■□□□□ 0.3
PTPRC-206ENST00000413409 NCKIPSDQ9NZQ3 722 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 TAGLN3Q9UI15 199 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 PCDHGC4Q9Y5F7 938 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 PCDHGB2Q9Y5G2 931 aa16.92■□□□□ 0.3
PTPRC-206ENST00000413409 ZNF106Q9H2Y7 1883 aaKnown RBP16.91■□□□□ 0.3
PTPRC-206ENST00000413409 CCDC189A1A4V9 331 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 MATN2O00339 956 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 HDAC3O15379 428 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 FLRT2O43155 660 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 CCDC166P0CW27 439 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 RPL14P50914 215 aaKnown RBP16.91■□□□□ 0.3
PTPRC-206ENST00000413409 PGGT1BP53609 377 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 KCNC4Q03721 635 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 CFAP157Q5JU67 520 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 ARMC12Q5T9G4 340 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 METTL21CQ5VZV1 264 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 EGFLAMQ63HQ2 1017 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 LDB1Q86U70 411 aaPredicted RBP16.91■□□□□ 0.3
PTPRC-206ENST00000413409 TREML1Q86YW5 311 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 LMLNQ96KR4 655 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 MMADHCQ9H3L0 296 aaPredicted RBP16.91■□□□□ 0.3
PTPRC-206ENST00000413409 ABCB8Q9NUT2 735 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 ARMCX1Q9P291 453 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 FCF1Q9Y324 198 aaKnown RBP16.91■□□□□ 0.3
PTPRC-206ENST00000413409 ZNF711Q9Y462 761 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 COMMD10Q9Y6G5 202 aa16.91■□□□□ 0.3
PTPRC-206ENST00000413409 A8MT66 165 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 STX7O15400 261 aaKnown RBP16.9■□□□□ 0.3
PTPRC-206ENST00000413409 HTRA2O43464 458 aaPredicted RBP16.9■□□□□ 0.3
PTPRC-206ENST00000413409 TNFSF14O43557 240 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 BUD23O43709 281 aaKnown RBP16.9■□□□□ 0.3
PTPRC-206ENST00000413409 TULP3O75386 442 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 PGLSO95336 258 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 PIGNO95427 931 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 CER1O95813 267 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 IGSF6O95976 241 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 ADH1CP00326 375 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 MPSTP25325 297 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 TTPAP49638 278 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 NAGLUP54802 743 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 ALDH18A1P54886 795 aaKnown RBP16.9■□□□□ 0.3
PTPRC-206ENST00000413409 GALNT1Q10472 559 aaPredicted RBP16.9■□□□□ 0.3
PTPRC-206ENST00000413409 PTPRCAPQ14761 206 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 ARL13AQ5H913 290 aaPredicted RBP16.9■□□□□ 0.3
PTPRC-206ENST00000413409 SEL1L3Q68CR1 1132 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 TRMT11Q7Z4G4 463 aaKnown RBP16.9■□□□□ 0.3
PTPRC-206ENST00000413409 APCDD1Q8J025 514 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 KIAA1958Q8N8K9 716 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 FAM181AQ8N9Y4 354 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 FAR2Q96K12 515 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 CNDP1Q96KN2 507 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 MRGPRX1Q96LB2 322 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 MIPEPQ99797 713 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 TRMOQ9BU70 441 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 CCDC28BQ9BUN5 200 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 MIR1-1HGQ9H1L0 117 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 MAGEE1Q9HCI5 957 aa16.9■□□□□ 0.3
PTPRC-206ENST00000413409 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.9■□□□□ 0.3
PTPRC-206ENST00000413409 CAPN8A6NHC0 703 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 SLC9A3R1O14745 358 aaPredicted RBP16.89■□□□□ 0.29
PTPRC-206ENST00000413409 IPO13O94829 963 aaKnown RBP16.89■□□□□ 0.29
PTPRC-206ENST00000413409 CHRNGP07510 517 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 ZNF37AP17032 561 aaPredicted RBP16.89■□□□□ 0.29
PTPRC-206ENST00000413409 TFEBP19484 476 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 PRDX6P30041 224 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 EPHB1P54762 984 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 TIAL1Q01085 375 aaKnown RBP eCLIP16.89■□□□□ 0.29
PTPRC-206ENST00000413409 DNAL1Q4LDG9 190 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 ATXN7L2Q5T6C5 722 aaPredicted RBP16.89■□□□□ 0.29
PTPRC-206ENST00000413409 LSMEM2Q8N112 164 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 ARHGAP24Q8N264 748 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 TEX9Q8N6V9 391 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 C1orf216Q8TAB5 229 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 RHEBL1Q8TAI7 183 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 ANKRD49Q8WVL7 239 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 ISG20Q96AZ6 181 aaKnown RBP16.89■□□□□ 0.29
PTPRC-206ENST00000413409 NXPE2Q96DL1 559 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 CCDC68Q9H2F9 335 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 COG4Q9H9E3 785 aa16.89■□□□□ 0.29
PTPRC-206ENST00000413409 FKBPLQ9UIM3 349 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms